Query gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 19:59:59 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780888.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2k5j_A Uncharacterized protei 8.6 59 0.0017 15.4 -0.8 19 4-22 2-20 (80)
2 >1bf6_A Phosphotriesterase hom 7.9 93 0.0028 14.4 -0.1 21 7-30 54-74 (146)
3 >1ivd_A Influenza A subtype N2 7.5 85 0.0025 14.6 -0.4 14 10-23 16-29 (56)
4 >1v0z_A Neuraminidase; glycosi 7.0 82 0.0024 14.7 -0.7 14 10-23 27-40 (66)
5 >1izn_B CAPZ beta-1 subunit; h 5.8 2.4E+02 0.0072 12.3 1.5 33 16-48 140-172 (203)
6 >1ej6_B Lambda1; icosahedral, 5.7 2.3E+02 0.0068 12.4 1.0 13 40-52 12-24 (101)
7 >1lns_A X-prolyl dipeptidyl am 5.4 2.5E+02 0.0073 12.3 1.0 14 24-37 74-87 (176)
8 >1hyw_A GPW, head-TO-tail join 5.3 1.5E+02 0.0043 13.4 -0.2 23 5-27 13-35 (68)
9 >2cya_A Tyrosyl-tRNA synthetas 5.0 1.8E+02 0.0053 13.0 0.1 5 17-21 6-10 (106)
10 >1b7y_B Phers, protein (phenyl 4.5 1.9E+02 0.0057 12.8 -0.0 11 4-14 50-60 (135)
No 1
>>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str} (A:)
Probab=8.63 E-value=59 Score=15.38 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=14.4
Q ss_pred CCCCHHHHHHHHHHHCCCC
Q ss_conf 2110332002322200146
Q gi|254780888|r 4 RPIHAMDMGRTVVKMSKSG 22 (64)
Q Consensus 4 rpihamdmgrtvvkmsksg 22 (64)
.++..|||.||.+.++..-
T Consensus 2 ~~~~~~~M~Rt~IdL~ee~ 20 (80)
T 2k5j_A 2 NSLAGIDMGRILLDLSNEV 20 (80)
T ss_dssp CCCSSTTCCEEEEEECHHH
T ss_pred CCHHHCCHHHHHCCCCHHH
T ss_conf 5310000456421599999
No 2
>>1bf6_A Phosphotriesterase homology protein; hypothetical protein; 1.70A {Escherichia coli} (A:1-88,A:234-291)
Probab=7.87 E-value=93 Score=14.37 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=14.7
Q ss_pred CHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 033200232220014630000030
Q gi|254780888|r 7 HAMDMGRTVVKMSKSGVISEKTGL 30 (64)
Q Consensus 7 hamdmgrtvvkmsksgvisektgl 30 (64)
-.++|||.+-++.+ +||+||+
T Consensus 54 T~~g~GRd~~~l~~---is~~tGv 74 (146)
T 1bf6_A 54 TNRYMGRNAQFMLD---VMRETGI 74 (146)
T ss_dssp CCGGGTCCHHHHHH---HHHHHCC
T ss_pred CCCCCCCCHHHHHH---HHHHCCC
T ss_conf 88866558999999---9985788
No 3
>>1ivd_A Influenza A subtype N2 neuraminidase; hydrolase (O-glycosyl); HET: NAG BMA FUL MAN FUC ST1; 1.90A {Influenza a virus} (A:265-320)
Probab=7.48 E-value=85 Score=14.57 Aligned_cols=14 Identities=50% Similarity=0.560 Sum_probs=11.8
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 20023222001463
Q gi|254780888|r 10 DMGRTVVKMSKSGV 23 (64)
Q Consensus 10 dmgrtvvkmsksgv 23 (64)
=||||.-+-|.||.
T Consensus 16 W~GRTiS~~sRsGf 29 (56)
T 1ivd_A 16 WMGRTISKDLRSGY 29 (56)
T ss_dssp EEEEESCSSSSCCE
T ss_pred EEEEEECCCCCCCC
T ss_conf 87653147666762
No 4
>>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A* (A:255-320)
Probab=7.05 E-value=82 Score=14.66 Aligned_cols=14 Identities=50% Similarity=0.627 Sum_probs=11.7
Q ss_pred HHHHHHHHHCCCCC
Q ss_conf 20023222001463
Q gi|254780888|r 10 DMGRTVVKMSKSGV 23 (64)
Q Consensus 10 dmgrtvvkmsksgv 23 (64)
=||||.-+-|.||.
T Consensus 27 W~GRTiS~~sRsGf 40 (66)
T 1v0z_A 27 WLGRTISKDSRSGY 40 (66)
T ss_dssp EEEECSSSSSSEEE
T ss_pred EEEEECCCCCCCCC
T ss_conf 86651047666761
No 5
>>1izn_B CAPZ beta-1 subunit; heterodimer, capping protein, actin filament barbed END capping, protein binding; 2.10A {Gallus gallus} (B:46-248)
Probab=5.76 E-value=2.4e+02 Score=12.30 Aligned_cols=33 Identities=24% Similarity=0.325 Sum_probs=23.2
Q ss_pred HHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 220014630000030345431784153397664
Q gi|254780888|r 16 VKMSKSGVISEKTGLMSAVIIEPPHIINIIKIM 48 (64)
Q Consensus 16 vkmsksgvisektglmsaviiepphiiniikim 48 (64)
.+|.-||.++...---..+-...+||.||=+..
T Consensus 140 g~~~lsG~ltrq~e~~~~~~~~~~Hi~NiG~lI 172 (203)
T 1izn_B 140 GTMNLGGSLTRQMEKDETVSDSSPHIANIGRLV 172 (203)
T ss_dssp EEEEEEEEEEEEEEEEEECCSSSCHHHHHHHHH
T ss_pred CEEECCCEEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 406325135651001206789865999999999
No 6
>>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase, methyltransferase, guanylyltransferase, zinc finger, icosahedral virus; 3.60A {Reovirus SP} (B:504-528,B:910-985)
Probab=5.70 E-value=2.3e+02 Score=12.40 Aligned_cols=13 Identities=54% Similarity=0.621 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 1533976642352
Q gi|254780888|r 40 HIINIIKIMNIIM 52 (64)
Q Consensus 40 hiiniikimniim 52 (64)
.|-.||.||||--
T Consensus 12 ~~~~~~~~~~~~~ 24 (101)
T 1ej6_B 12 QISQIIRIMNIGN 24 (101)
T ss_dssp HHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999998851356
No 7
>>1lns_A X-prolyl dipeptidyl aminopetidase; alpha beta hydrolase fold; 2.20A {Lactococcus lactis} (A:552-640,A:677-763)
Probab=5.41 E-value=2.5e+02 Score=12.27 Aligned_cols=14 Identities=29% Similarity=0.729 Sum_probs=10.6
Q ss_pred CCCCCCCEEEEEEC
Q ss_conf 00000303454317
Q gi|254780888|r 24 ISEKTGLMSAVIIE 37 (64)
Q Consensus 24 isektglmsaviie 37 (64)
-|+..||.||-+++
T Consensus 74 ~~~~~gl~saq~l~ 87 (176)
T 1lns_A 74 LNDTKGFLSAQILD 87 (176)
T ss_dssp ESSSCCEEEEEEEE
T ss_pred ECCCCCEEEEEEEE
T ss_conf 77987089999999
No 8
>>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} (A:)
Probab=5.33 E-value=1.5e+02 Score=13.41 Aligned_cols=23 Identities=26% Similarity=0.403 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCC
Q ss_conf 11033200232220014630000
Q gi|254780888|r 5 PIHAMDMGRTVVKMSKSGVISEK 27 (64)
Q Consensus 5 pihamdmgrtvvkmsksgvisek 27 (64)
..|.+-.|+.|+..||.|---|-
T Consensus 13 AlH~LltGk~vvsv~kdGr~vey 35 (68)
T 1hyw_A 13 ALHDLMTGKRVATVQKDGRRVEF 35 (68)
T ss_dssp HHHHHTTSCCCEEEECSSCEEEE
T ss_pred HHHHHHCCCEEEEEECCCCEEEE
T ss_conf 99987507666756217818898
No 9
>>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix} (A:233-338)
Probab=4.98 E-value=1.8e+02 Score=12.95 Aligned_cols=5 Identities=100% Similarity=1.006 Sum_probs=0.0
Q ss_pred HHCCC
Q ss_conf 20014
Q gi|254780888|r 17 KMSKS 21 (64)
Q Consensus 17 kmsks 21 (64)
|||||
T Consensus 6 KMSkS 10 (106)
T 2cya_A 6 KMSKS 10 (106)
T ss_dssp BCCSS
T ss_pred CCCCC
T ss_conf 65568
No 10
>>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer; HET: FYA; 2.50A {Thermus thermophilus} (B:209-267,B:325-400)
Probab=4.52 E-value=1.9e+02 Score=12.79 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=0.0
Q ss_pred CCCCHHHHHHH
Q ss_conf 21103320023
Q gi|254780888|r 4 RPIHAMDMGRT 14 (64)
Q Consensus 4 rpihamdmgrt 14 (64)
.|+||.|..++
T Consensus 50 qP~hafD~~kt 60 (135)
T 1b7y_B 50 QPMHAFDLRFR 60 (135)
T ss_dssp CCCEEEEGGGC
T ss_pred CCCCCCCCCCH
T ss_conf 00123432110
Done!