Query gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Tue May 31 21:34:56 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780888.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2k5j_A Uncharacterized protein 11.6 27 0.0012 16.3 -0.8 19 4-22 2-20 (80)
2 2kkt_A Ataxin-7-like protein 3 9.8 63 0.0026 14.5 0.5 32 18-49 14-46 (84)
3 1hyw_A GPW, head-TO-tail joini 4.7 1.2E+02 0.005 13.1 -0.2 19 5-23 13-31 (68)
4 1xd7_A YWNA; structural genomi 2.3 3.6E+02 0.015 10.7 1.8 39 13-51 42-80 (145)
5 3ofo_U 30S ribosomal protein S 2.3 3.6E+02 0.015 10.7 0.5 12 16-27 18-29 (51)
6 2q82_A Core protein P7; NESG, 2.3 2.9E+02 0.012 11.2 -0.2 30 12-41 23-60 (129)
7 1ylf_A RRF2 family protein; st 2.2 3.7E+02 0.016 10.6 2.1 40 12-51 48-87 (149)
8 1z9m_A GAPA225; nectin-like, I 2.2 3.6E+02 0.015 10.7 0.2 16 3-18 107-122 (145)
9 3aa0_B F-actin-capping protein 2.2 3.8E+02 0.016 10.5 1.2 32 17-48 186-217 (244)
10 1nsc_A Neuraminidase; hydrolas 2.1 2.5E+02 0.01 11.5 -0.7 12 11-22 289-300 (390)
No 1
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=11.63 E-value=27 Score=16.26 Aligned_cols=19 Identities=26% Similarity=0.566 Sum_probs=14.1
Q ss_pred CCCCHHHHHHHHHHHCCCC
Q ss_conf 2110332002322200146
Q gi|254780888|r 4 RPIHAMDMGRTVVKMSKSG 22 (64)
Q Consensus 4 rpihamdmgrtvvkmsksg 22 (64)
.++..|||+||.|.++..-
T Consensus 2 ~~~~~~~M~Rt~IdL~ee~ 20 (80)
T 2k5j_A 2 NSLAGIDMGRILLDLSNEV 20 (80)
T ss_dssp CCCSSTTCCEEEEEECHHH
T ss_pred CCCCCCCHHHHEECCCHHH
T ss_conf 7300014101013289999
No 2
>2kkt_A Ataxin-7-like protein 3; zinc finger, transcription, activator, alternative splicing, chromatin regulator, metal-binding, nucleus; NMR {Homo sapiens}
Probab=9.80 E-value=63 Score=14.46 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=19.5
Q ss_pred HCCCCCCCCCCCCEEEEEEC-CCHHHHHHHHHH
Q ss_conf 00146300000303454317-841533976642
Q gi|254780888|r 18 MSKSGVISEKTGLMSAVIIE-PPHIINIIKIMN 49 (64)
Q Consensus 18 msksgvisektglmsaviie-pphiiniikimn 49 (64)
..--|||||.|+-|.+--.. |-|--.--+-+.
T Consensus 14 ~~~CgviSehT~kmCtRs~rCPQHTdeQR~~vR 46 (84)
T 2kkt_A 14 TTQCGVISEHTKKMCTRSLRCPQHTDEQRRTVR 46 (84)
T ss_dssp TTBCCCCBTTTTBSCCSBTTSSSCCHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHCCCCCCCCHHHHHHHH
T ss_conf 875666346512567631568655579988788
No 3
>1hyw_A GPW, head-TO-tail joining protein W; novel fold, two helices, one two-stranded beta-sheet, viral protein; NMR {Enterobacteria phage lambda} SCOP: d.186.1.1
Probab=4.70 E-value=1.2e+02 Score=13.07 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=16.2
Q ss_pred CCCHHHHHHHHHHHCCCCC
Q ss_conf 1103320023222001463
Q gi|254780888|r 5 PIHAMDMGRTVVKMSKSGV 23 (64)
Q Consensus 5 pihamdmgrtvvkmsksgv 23 (64)
..|.+-.|+.||..+|.|-
T Consensus 13 AlH~Ll~G~~Vvsv~kdgr 31 (68)
T 1hyw_A 13 ALHDLMTGKRVATVQKDGR 31 (68)
T ss_dssp HHHHHTTSCCCEEEECSSC
T ss_pred HHHHHHHCCEEEEEEECCE
T ss_conf 9999874762799987896
No 4
>1xd7_A YWNA; structural genomics, protein structure initiative, winged helix DNA binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=2.32 E-value=3.6e+02 Score=10.67 Aligned_cols=39 Identities=15% Similarity=0.441 Sum_probs=28.2
Q ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 232220014630000030345431784153397664235
Q gi|254780888|r 13 RTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNII 51 (64)
Q Consensus 13 rtvvkmsksgvisektglmsaviiepphiiniikimnii 51 (64)
+..-++.|.|.+.-+.|--.-....||.-|++..|+..+
T Consensus 42 kIl~~L~kaGlV~S~~g~GG~~Lar~p~~Itl~dI~~av 80 (145)
T 1xd7_A 42 RMISLLKKADILTSRAGVPGASLKKDPADISLLEVYRAV 80 (145)
T ss_dssp HHHHHHHHTTSEECCSSSSSCEESSCGGGCBHHHHHHHH
T ss_pred HHHHHHHHCCEEEEECCCCCCCCCCCHHHCCHHHHHHHH
T ss_conf 999999878907820899983011898986799999998
No 5
>3ofo_U 30S ribosomal protein S21; protein biosynthesis, ribosomes, RNA, tRNA, transfer, eryThr ketolide, macrolide, antibiotic, EXIT, peptidyl; 3.10A {Escherichia coli} PDB: 3fih_U* 2wwl_U 3ofp_U
Probab=2.32 E-value=3.6e+02 Score=10.67 Aligned_cols=12 Identities=33% Similarity=0.487 Sum_probs=8.1
Q ss_pred HHHCCCCCCCCC
Q ss_conf 220014630000
Q gi|254780888|r 16 VKMSKSGVISEK 27 (64)
Q Consensus 16 vkmsksgvisek 27 (64)
-++.++|++.|-
T Consensus 18 r~v~k~Gil~E~ 29 (51)
T 3ofo_U 18 RSCEKAGVLAEV 29 (51)
T ss_dssp GGSSTTTTTTTS
T ss_pred HHHHHCCCHHHH
T ss_conf 999983519999
No 6
>2q82_A Core protein P7; NESG, OC1, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.83A {Pseudomonas phage PHI12}
Probab=2.31 E-value=2.9e+02 Score=11.16 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=19.4
Q ss_pred HHHHHHHCCCCCCCCCCCCE--------EEEEECCCHH
Q ss_conf 02322200146300000303--------4543178415
Q gi|254780888|r 12 GRTVVKMSKSGVISEKTGLM--------SAVIIEPPHI 41 (64)
Q Consensus 12 grtvvkmsksgvisektglm--------saviiepphi 41 (64)
..++.-||.||-.|--+|.- .++..|.|.+
T Consensus 23 ETs~mVMSH~GDV~~~~GF~V~R~~Tm~~~~~~E~~~v 60 (129)
T 2q82_A 23 ETSLMVMSHNGDVPVITGFNVMRVTTMLDALKVELPAV 60 (129)
T ss_dssp HTEEEEEECCSSCCCCTTCEEEECSSHHHHTTC--CEE
T ss_pred HHEEEEEECCCCCCCCCCEEEEEEHHHHHHHHHHCCCE
T ss_conf 01268883279866335546766088999998624706
No 7
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, PSI, protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=2.23 E-value=3.7e+02 Score=10.60 Aligned_cols=40 Identities=13% Similarity=0.302 Sum_probs=30.3
Q ss_pred HHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHH
Q ss_conf 0232220014630000030345431784153397664235
Q gi|254780888|r 12 GRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNII 51 (64)
Q Consensus 12 grtvvkmsksgvisektglmsaviiepphiiniikimnii 51 (64)
.+.+.++.+.|.+.-+.|--.-.+-.+|.-|++..|...+
T Consensus 48 ~kil~~L~kaGlv~s~rG~GGy~L~r~p~~ItL~dI~~ai 87 (149)
T 1ylf_A 48 RKIMSYLKQAGFVYVNRGPGGAGLLKDLHEITLLDVYHAV 87 (149)
T ss_dssp HHHHHHHHHTTSEEEC---CCEEESSCGGGCBHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCCCCEECCCHHHCCHHHHHHHH
T ss_conf 9999999988986731699985304887555899999998
No 8
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}
Probab=2.19 E-value=3.6e+02 Score=10.68 Aligned_cols=16 Identities=19% Similarity=0.287 Sum_probs=7.0
Q ss_pred CCCCCHHHHHHHHHHH
Q ss_conf 1211033200232220
Q gi|254780888|r 3 IRPIHAMDMGRTVVKM 18 (64)
Q Consensus 3 irpihamdmgrtvvkm 18 (64)
|+.+..-|.|.-....
T Consensus 107 I~~v~~~D~G~Y~C~v 122 (145)
T 1z9m_A 107 ISNVALADEGEYTCSI 122 (145)
T ss_dssp ECSCCGGGCEEEEEEE
T ss_pred EEECCCCCCEEEEEEE
T ss_conf 9576346897999999
No 9
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B
Probab=2.16 E-value=3.8e+02 Score=10.54 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=19.3
Q ss_pred HHCCCCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 20014630000030345431784153397664
Q gi|254780888|r 17 KMSKSGVISEKTGLMSAVIIEPPHIINIIKIM 48 (64)
Q Consensus 17 kmsksgvisektglmsaviiepphiiniikim 48 (64)
+|.-||.++...-.-..+-...+||.||=+..
T Consensus 186 ~~~LsG~ltrq~e~~~~~~~~~~Hi~NiG~mI 217 (244)
T 3aa0_B 186 TMNLGGSLTRQMEKDETVSDSSPHIANIGRLV 217 (244)
T ss_dssp EEEEEEEEEEEEEEEEECSSSSCHHHHHHHHH
T ss_pred EEECCEEEEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 17524157762100006889973999999999
No 10
>1nsc_A Neuraminidase; hydrolase(O-glycosyl); HET: NAG SIA; 1.70A {Influenza b virus} SCOP: b.68.1.1 PDB: 1a4g_A* 1nsb_A* 1a4q_A* 1nsd_A* 1b9v_A* 1b9s_A* 1b9t_A* 1inv_A* 1ivb_A* 1inf_A* 1vcj_A*
Probab=2.15 E-value=2.5e+02 Score=11.48 Aligned_cols=12 Identities=33% Similarity=0.520 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCC
Q ss_conf 002322200146
Q gi|254780888|r 11 MGRTVVKMSKSG 22 (64)
Q Consensus 11 mgrtvvkmsksg 22 (64)
||||.-+-|.||
T Consensus 289 ~GRTiS~~SRSG 300 (390)
T 1nsc_A 289 YSRTMSKTERMG 300 (390)
T ss_dssp EEECSSSSSSEE
T ss_pred EEEECCCCCCCC
T ss_conf 744216877686
Done!