Query gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 64
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 10:23:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780888.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gyca1 b.6.1.3 (A:1-130) Lacc 4.4 1.2E+02 0.009 11.8 1.1 13 27-39 117-129 (130)
2 d1aoza1 b.6.1.3 (A:1-129) Asco 4.4 1.2E+02 0.009 11.8 1.2 14 27-40 112-125 (129)
3 d2i7na1 c.55.1.14 (A:236-381) 3.6 62 0.0045 13.3 -1.1 16 5-20 2-17 (146)
4 d1kv7a1 b.6.1.3 (A:31-170) mul 3.1 1.7E+02 0.012 11.2 0.6 15 28-42 124-138 (140)
5 d2j5pa1 a.4.5.67 (A:1261-1329) 2.5 1.9E+02 0.014 10.8 1.2 28 12-39 39-67 (69)
6 d1mzya1 b.6.1.3 (A:41-193) Nit 2.4 2E+02 0.015 10.7 1.1 13 27-39 139-151 (153)
7 d2q9oa1 b.6.1.3 (A:1-162) Lacc 2.4 2E+02 0.015 10.7 1.2 11 29-39 148-158 (162)
8 d1iznb_ e.43.1.2 (B:) Capz bet 2.2 2.2E+02 0.016 10.6 1.2 31 17-47 185-215 (270)
9 d1ilea3 c.26.1.1 (A:1-197,A:38 2.1 2.1E+02 0.015 10.7 0.0 5 17-21 402-406 (452)
10 d1oaoa_ e.26.1.2 (A:) Bifuncti 2.0 2.3E+02 0.017 10.5 0.2 39 23-61 618-658 (673)
No 1
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]}
Probab=4.43 E-value=1.2e+02 Score=11.82 Aligned_cols=13 Identities=23% Similarity=0.445 Sum_probs=8.8
Q ss_pred CCCCEEEEEECCC
Q ss_conf 0030345431784
Q gi|254780888|r 27 KTGLMSAVIIEPP 39 (64)
Q Consensus 27 ktglmsaviiepp 39 (64)
-.||..+.|||||
T Consensus 117 ~~Gl~G~liV~~p 129 (130)
T d1gyca1 117 CDGLRGPFVVYDP 129 (130)
T ss_dssp GGTCEEEEEEECT
T ss_pred HCCCEEEEEEECC
T ss_conf 5889898999389
No 2
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]}
Probab=4.38 E-value=1.2e+02 Score=11.80 Aligned_cols=14 Identities=36% Similarity=0.966 Sum_probs=9.9
Q ss_pred CCCCEEEEEECCCH
Q ss_conf 00303454317841
Q gi|254780888|r 27 KTGLMSAVIIEPPH 40 (64)
Q Consensus 27 ktglmsaviiepph 40 (64)
..||..+.|||||.
T Consensus 112 ~~Gm~G~~iV~~~~ 125 (129)
T d1aoza1 112 SAGLYGSLIVDPPQ 125 (129)
T ss_dssp GGTCEEEEEEECCT
T ss_pred HCCCEEEEEECCCC
T ss_conf 68898999992888
No 3
>d2i7na1 c.55.1.14 (A:236-381) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.65 E-value=62 Score=13.29 Aligned_cols=16 Identities=44% Similarity=0.706 Sum_probs=12.7
Q ss_pred CCCHHHHHHHHHHHCC
Q ss_conf 1103320023222001
Q gi|254780888|r 5 PIHAMDMGRTVVKMSK 20 (64)
Q Consensus 5 pihamdmgrtvvkmsk 20 (64)
|.-|||.|-|.+|+.-
T Consensus 2 p~faiDIGGSL~KlVY 17 (146)
T d2i7na1 2 PWFGMDIGGTLVKLVY 17 (146)
T ss_dssp CEEEEEECSSEEEEEE
T ss_pred CEEEEEECCCEEEEEE
T ss_conf 7689985772599999
No 4
>d1kv7a1 b.6.1.3 (A:31-170) multi-copper oxidase CueO {Escherichia coli [TaxId: 562]}
Probab=3.05 E-value=1.7e+02 Score=11.15 Aligned_cols=15 Identities=40% Similarity=0.631 Sum_probs=11.5
Q ss_pred CCCEEEEEECCCHHH
Q ss_conf 030345431784153
Q gi|254780888|r 28 TGLMSAVIIEPPHII 42 (64)
Q Consensus 28 tglmsaviiepphii 42 (64)
.||+.++||||+.-.
T Consensus 124 ~Gl~G~liV~~~e~~ 138 (140)
T d1kv7a1 124 MGLAGLVVIEDDEIL 138 (140)
T ss_dssp TTCCEEEEEECHHHH
T ss_pred CCCEEEEEECCCCCC
T ss_conf 889689999785122
No 5
>d2j5pa1 a.4.5.67 (A:1261-1329) DNA translocase FtsK {Escherichia coli [TaxId: 562]}
Probab=2.54 E-value=1.9e+02 Score=10.83 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=18.5
Q ss_pred HHHHHHHCCCCCCCCCCCCEEE-EEECCC
Q ss_conf 0232220014630000030345-431784
Q gi|254780888|r 12 GRTVVKMSKSGVISEKTGLMSA-VIIEPP 39 (64)
Q Consensus 12 grtvvkmsksgvisektglmsa-viiepp 39 (64)
.|-+-.|...|++|...|--.- |++.||
T Consensus 39 ariid~LE~~GiVsp~~~~~~ReVL~~~~ 67 (69)
T d2j5pa1 39 ARIIEQMEAQGIVSEQGHNGNREVLAPPP 67 (69)
T ss_dssp HHHHHHHHHHTSBCCCCSSSEEEBCSCCS
T ss_pred HHHHHHHHHCCCCCCCCCCCCCEECCCCC
T ss_conf 99999999887688777997996728998
No 6
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=2.40 E-value=2e+02 Score=10.73 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=8.4
Q ss_pred CCCCEEEEEECCC
Q ss_conf 0030345431784
Q gi|254780888|r 27 KTGLMSAVIIEPP 39 (64)
Q Consensus 27 ktglmsaviiepp 39 (64)
..||..+.||||+
T Consensus 139 ~~Gm~G~~iV~P~ 151 (153)
T d1mzya1 139 VSGMAGCIMVLPR 151 (153)
T ss_dssp HTTCEEEEEEECT
T ss_pred HCCCEEEEEEECC
T ss_conf 5899799999669
No 7
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]}
Probab=2.38 E-value=2e+02 Score=10.72 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=0.0
Q ss_pred CCEEEEEECCC
Q ss_conf 30345431784
Q gi|254780888|r 29 GLMSAVIIEPP 39 (64)
Q Consensus 29 glmsaviiepp 39 (64)
||.-++||+||
T Consensus 148 Gl~G~~iV~~p 158 (162)
T d2q9oa1 148 GVVGTIQINGP 158 (162)
T ss_dssp TCEEEEEEECC
T ss_pred CCEEEEEECCC
T ss_conf 89789998899
No 8
>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=2.18 E-value=2.2e+02 Score=10.56 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=0.0
Q ss_pred HHCCCCCCCCCCCCEEEEEECCCHHHHHHHH
Q ss_conf 2001463000003034543178415339766
Q gi|254780888|r 17 KMSKSGVISEKTGLMSAVIIEPPHIINIIKI 47 (64)
Q Consensus 17 kmsksgvisektglmsaviiepphiiniiki 47 (64)
+|.-||.++...-.-..+-...+||.||=+.
T Consensus 185 ~~~LsGsltrq~e~~~~v~~~~~Hi~NiG~m 215 (270)
T d1iznb_ 185 TMNLGGSLTRQMEKDETVSDSSPHIANIGRL 215 (270)
T ss_dssp EEEEEEEEEEEEEEEEECCSSSCHHHHHHHH
T ss_pred EEEECCEEEEEECCCCCCCCCCCHHHHHHHH
T ss_conf 1750323464201110588996488889889
No 9
>d1ilea3 c.26.1.1 (A:1-197,A:387-641) Isoleucyl-tRNA synthetase (IleRS) {Thermus thermophilus [TaxId: 274]}
Probab=2.08 E-value=2.1e+02 Score=10.70 Aligned_cols=5 Identities=100% Similarity=1.006 Sum_probs=0.0
Q ss_pred HHCCC
Q ss_conf 20014
Q gi|254780888|r 17 KMSKS 21 (64)
Q Consensus 17 kmsks 21 (64)
|||||
T Consensus 402 KMSKS 406 (452)
T d1ilea3 402 KMSKS 406 (452)
T ss_dssp CCCTT
T ss_pred CCCCC
T ss_conf 44788
No 10
>d1oaoa_ e.26.1.2 (A:) Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit {Moorella thermoacetica [TaxId: 1525]}
Probab=2.05 E-value=2.3e+02 Score=10.46 Aligned_cols=39 Identities=15% Similarity=0.286 Sum_probs=0.0
Q ss_pred CCCCCCC--CEEEEEECCCHHHHHHHHHHHHHEECCCCCCE
Q ss_conf 3000003--03454317841533976642352100010213
Q gi|254780888|r 23 VISEKTG--LMSAVIIEPPHIINIIKIMNIIMIKSARLGLN 61 (64)
Q Consensus 23 visektg--lmsaviiepphiiniikimniimiksarlgln 61 (64)
+..|.+. +-+..++|+-..----+|...|.-|...||+|
T Consensus 618 ~L~e~~~~~~gg~~~ve~Dp~~~a~~~~~~i~~kR~~Lgi~ 658 (673)
T d1oaoa_ 618 ILTQIASDVYGGYFIFEMDPQVAARKILDALEYRTWKLGVH 658 (673)
T ss_dssp HHHTHHHHHTSCEEEECSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99986675327379966899999999999999999984997
Done!