RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780888|ref|YP_003065301.1| hypothetical protein
CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)



>gnl|CDD|150680 pfam10034, Dpy19, Q-cell neuroblast polarisation.  Dyp-19,
          formerly known as DUF2211, is a transmembrane domain
          family that is required to orient the neuroblast cells,
          QR and QL accurately on the anterior-posterior axis: QL
          and QR are born in the same anterior-posterior
          position, but polarize and migrate left-right
          asymmetrically, QL migrating towards the posterior and
          QR migrating towards the anterior. It is also required,
          with unc-40, to express mab-5 correctly in the Q cell
          descendants. The Dpy-19 protein derives from the C.
          elegans DUMPY mutant.
          Length = 637

 Score = 23.8 bits (52), Expect = 9.2
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 29 GLMSAVIIEPPHIINIIKIMNI 50
           LM+    E P  IN ++  N+
Sbjct: 60 LLMNDNRTEYPLTINTLQRFNL 81


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.330    0.142    0.393 

Gapped
Lambda     K      H
   0.267   0.0712    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 982,737
Number of extensions: 46818
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 6
Length of query: 64
Length of database: 5,994,473
Length adjustment: 35
Effective length of query: 29
Effective length of database: 5,238,193
Effective search space: 151907597
Effective search space used: 151907597
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.1 bits)