BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62] (64 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62] Length = 64 Score = 125 bits (313), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 64/64 (100%), Positives = 64/64 (100%) Query: 1 MRIRPIHAMDMGRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNIIMIKSARLGL 60 MRIRPIHAMDMGRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNIIMIKSARLGL Sbjct: 1 MRIRPIHAMDMGRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNIIMIKSARLGL 60 Query: 61 NLFF 64 NLFF Sbjct: 61 NLFF 64 >gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str. psy62] Length = 189 Score = 22.3 bits (46), Expect = 1.8, Method: Compositional matrix adjust. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 2 RIRPIHAMDMGRTVVKMSKSGVI 24 R+RP A D G V K + G++ Sbjct: 128 RVRPAVARDGGDIVFKGYRDGIV 150 >gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter asiaticus str. psy62] Length = 526 Score = 21.2 bits (43), Expect = 3.5, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 13/22 (59%) Query: 5 PIHAMDMGRTVVKMSKSGVISE 26 P+ MD GR V+ +K +I + Sbjct: 100 PLPPMDFGRVAVQSAKQVIIQK 121 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.330 0.142 0.393 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,001 Number of Sequences: 1233 Number of extensions: 926 Number of successful extensions: 4 Number of sequences better than 100.0: 4 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of query: 64 length of database: 328,796 effective HSP length: 35 effective length of query: 29 effective length of database: 285,641 effective search space: 8283589 effective search space used: 8283589 T: 11 A: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 31 (16.5 bits)