BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780888|ref|YP_003065301.1| hypothetical protein
CLIBASIA_03925 [Candidatus Liberibacter asiaticus str. psy62]
         (64 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780888|ref|YP_003065301.1| hypothetical protein CLIBASIA_03925 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 64

 Score =  125 bits (313), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/64 (100%), Positives = 64/64 (100%)

Query: 1  MRIRPIHAMDMGRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNIIMIKSARLGL 60
          MRIRPIHAMDMGRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNIIMIKSARLGL
Sbjct: 1  MRIRPIHAMDMGRTVVKMSKSGVISEKTGLMSAVIIEPPHIINIIKIMNIIMIKSARLGL 60

Query: 61 NLFF 64
          NLFF
Sbjct: 61 NLFF 64


>gi|254780430|ref|YP_003064843.1| nitrogen fixation protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 189

 Score = 22.3 bits (46), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 2   RIRPIHAMDMGRTVVKMSKSGVI 24
           R+RP  A D G  V K  + G++
Sbjct: 128 RVRPAVARDGGDIVFKGYRDGIV 150


>gi|254780788|ref|YP_003065201.1| transcription elongation factor NusA [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 526

 Score = 21.2 bits (43), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 5   PIHAMDMGRTVVKMSKSGVISE 26
           P+  MD GR  V+ +K  +I +
Sbjct: 100 PLPPMDFGRVAVQSAKQVIIQK 121


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.330    0.142    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,001
Number of Sequences: 1233
Number of extensions: 926
Number of successful extensions: 4
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 64
length of database: 328,796
effective HSP length: 35
effective length of query: 29
effective length of database: 285,641
effective search space:  8283589
effective search space used:  8283589
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 31 (16.5 bits)