HHsearch alignment for GI: 254780889 and conserved domain: COG0069
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism].
Probab=98.66 E-value=1.3e-07 Score=74.03 Aligned_cols=180 Identities=22% Similarity=0.323 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHCCC----CCEECCCCCCHHHHHHHHHCCCCEEEE-EECCCCCCCCCH-HCCCCCCCCHHHHHHHHHHH
Q ss_conf 899999999985798----724514646999999998548758996-102787665310-00157431003788999862
Q gi|254780889|r 260 KVLDAVVQIKKNFPS----LLVMAGNIATAEGALALIDAGADIIKV-GIGPGSICTTRV-VTGVGCPQLSAIMSVVEVAE 333 (493)
Q Consensus 260 ~~~~~i~~~k~~~~~----~~ii~GNv~t~~~~~~l~~~Gad~ikv-Gig~Gs~CtTr~-~~g~g~pq~~av~~~~~~~~ 333 (493)
T Consensus 289 DLaqlI~dLk~~~~~~~I~VKlva~~~v~~iaag-vakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~ 367 (485)
T COG0069 289 DLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAG-VAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLV 367 (485)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHH-HHHCCCCEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 9999999999618897069999256556778766-640469889975899867878565763687079988999999999
Q ss_pred CCC----CEEEEECCCCCHHHHEEEEEECCCEEEECCH--HH-CCCCCCCCEEEECCEEEEEEECCCCHHHHHHCCHHHH
Q ss_conf 269----8199726543777621336714878993230--10-1216776448736805888733200688752212221
Q gi|254780889|r 334 RAG----VAIVADGGIRFSGDIAKAIAAGSACVMIGSL--LA-GTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARY 406 (493)
Q Consensus 334 ~~~----~~iiadGGi~~~gdi~kAla~GA~~VM~G~~--~a-gt~Espg~~~~~~g~~~K~yrGm~S~~A~~~~~~~ry 406 (493)
T Consensus 368 ~~glRd~v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~--r~-CH~~t---Cp~GIaTqdp--------- 432 (485)
T COG0069 368 LNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMC--RV-CHTGT---CPVGIATQDP--------- 432 (485)
T ss_pred HCCCCCEEEEEECCCCCCHHHHHHHHHHCCCHHHHCHHHHHHHHHHHH--HH-CCCCC---CCCEEEECCH---------
T ss_conf 759864169994287067899999997086455202199998533866--44-15899---9750340588---------
Q ss_pred CCCCCCCCCCE-ECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCEEEEE
Q ss_conf 01233343310-04540266210575899899999999985551575877689737599999
Q gi|254780889|r 407 SQDGVTDVLKL-VPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKANFIRV 467 (493)
Q Consensus 407 ~~~~~~~~~k~-v~eGv~~~v~~~G~~~~~~~~~~~glrs~~~y~G~~~i~e~~~~~~f~~~ 467 (493)
T Consensus 433 -----~Lrkrl~~~~~~~-------~v~N~~~~~a~e~rella~lG~~~l~el~g~~d~L~~ 482 (485)
T COG0069 433 -----ELRKRLDVEGKPE-------RVINYFTFVAEELRELLAALGKRSLSELIGRTDLLRT 482 (485)
T ss_pred -----HHHHHCCCCCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCHHHHHC
T ss_conf -----8876337441089-------9999999999999999998678999997454676640