HHsearch alignment for GI: 254780889 and conserved domain: COG1304
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism].
Probab=99.48 E-value=4.3e-12 Score=106.16 Aligned_cols=143 Identities=29% Similarity=0.348 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEE
Q ss_conf 99999999985798724514646999999998548758996102787665310001574310037889998622698199
Q gi|254780889|r 261 VLDAVVQIKKNFPSLLVMAGNIATAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIV 340 (493)
Q Consensus 261 ~~~~i~~~k~~~~~~~ii~GNv~t~~~~~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~ii 340 (493)
T Consensus 206 ~ked~~~i~~~~~-~~lv~kGV~~~~D~~~a~~tg~~~I~vsnhgg------rqlD~g~st~~~L~ei~~av~~~-~~vi 277 (360)
T COG1304 206 SKEDGAGISKEWA-GPLVLKGILAPEDAAGAGGTGADGIEVSNHGG------RQLDWGISTADSLPEIVEAVGDR-IEVI 277 (360)
T ss_pred CHHHHHHHHHHCC-CCHHHHCCCCHHHHHHHCCCCCEEEEEECCCC------CCCCCCCCHHHHHHHHHHHHCCC-EEEE
T ss_conf 3777767877507-75877478978888763368822899976787------40257877699999999971887-1799
Q ss_pred EECCCCCHHHHEEEEEECCCEEEECCHHHCCCCCCCCEEEECCEEEEEEECCCCHHHHHHCCHHHHCCCCCCCCCCEECC
Q ss_conf 72654377762133671487899323010121677644873680588873320068875221222101233343310045
Q gi|254780889|r 341 ADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSSARYSQDGVTDVLKLVPE 420 (493)
Q Consensus 341 adGGi~~~gdi~kAla~GA~~VM~G~~~agt~Espg~~~~~~g~~~K~yrGm~S~~A~~~~~~~ry~~~~~~~~~k~v~e 420 (493)
T Consensus 278 ~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~---------------------------------------------~~ 312 (360)
T COG1304 278 ADGGIRSGLDVAKALALGADAVGIGRPFLYGLA---------------------------------------------AG 312 (360)
T ss_pred ECCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH---------------------------------------------HC
T ss_conf 638878778999999937765452599999998---------------------------------------------55
Q ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCE
Q ss_conf 4026621057589989999999998555157587768973759
Q gi|254780889|r 421 GIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKAN 463 (493)
Q Consensus 421 Gv~~~v~~~G~~~~~~~~~~~glrs~~~y~G~~~i~e~~~~~~ 463 (493)
T Consensus 313 g~~G-------V~~~le~~~~El~~~M~L~G~~~i~el~~~~l 348 (360)
T COG1304 313 GEAG-------VERVLEIIRKELKIAMALTGAKNIEELKRVPL 348 (360)
T ss_pred CHHH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCE
T ss_conf 6878-------99999999999999997428881999655736