HHsearch alignment for GI: 254780889 and conserved domain: COG4109
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription].
Probab=99.73 E-value=1.6e-17 Score=145.18 Aligned_cols=151 Identities=28% Similarity=0.365 Sum_probs=128.5
Q ss_pred EECCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCEE--CCCEEEECCCCHHHHHHHHHHH
Q ss_conf 60031783378523688899999977987999789898999999998742238815--2878994654303456566760
Q gi|254780889|r 44 TLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMV--VNPVTISPYATLADALALMKKY 121 (493)
Q Consensus 44 ~l~iPivSs~MDTVTe~~MAiamA~~GGiGvIHrn~sie~qa~~V~kVKr~e~gmI--~dPVti~pd~TI~ea~~lm~~~ 121 (493)
T Consensus 155 e~~lPvlstsYDTFTVAtm-IN~Al--------~n~lIKkd------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt 219 (432)
T COG4109 155 EKGLPVLSTSYDTFTVATM-INKAL--------SNQLIKKD------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKT 219 (432)
T ss_pred CCCCCEEEECCCCEEHHHH-HHHHH--------HHHHHHHH------EEEHHHHCCCCCCCEECCCCCCHHHHHHHHHHC
T ss_conf 1488448704521309999-98998--------77666443------255877446443432324645099999999971
Q ss_pred CCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEE
Q ss_conf 50416786688602788723545001434467244002678632573035899999998655330645747997868898
Q gi|254780889|r 122 SISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLIT 201 (493)
Q Consensus 122 ~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT 201 (493)
T Consensus 220 ~~sRfPVvn~~-~kvvGvVt~rDv~~-~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiit 297 (432)
T COG4109 220 GHSRFPVVNRS-MKVVGVVTMRDVLD-KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIIT 297 (432)
T ss_pred CCCCCCEECCC-CEEEEEEEEHHHHC-CCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE
T ss_conf 98734133144-26999998346444-79986177774269755425226889988887645526568837861898988
Q ss_pred ECCCHHCCCC
Q ss_conf 0210001017
Q gi|254780889|r 202 VKDIERSQLN 211 (493)
Q Consensus 202 ~~DIlk~~~~ 211 (493)
T Consensus 298 R~dvlk~lq~ 307 (432)
T COG4109 298 RQDVLKSLQM 307 (432)
T ss_pred HHHHHHHHHH
T ss_conf 9999999987