HHsearch alignment for GI: 254780889 and conserved domain: COG4109

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription].
Probab=99.73  E-value=1.6e-17  Score=145.18  Aligned_cols=151  Identities=28%  Similarity=0.365  Sum_probs=128.5

Q ss_pred             EECCCEEEECCCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHHHHHHHHHHCCCEE--CCCEEEECCCCHHHHHHHHHHH
Q ss_conf             60031783378523688899999977987999789898999999998742238815--2878994654303456566760
Q gi|254780889|r   44 TLNLPIMSAAMDQVTDSRLAIAMAQAGGLGVIHRNFSPSEQVAQVHQVKKFESGMV--VNPVTISPYATLADALALMKKY  121 (493)
Q Consensus        44 ~l~iPivSs~MDTVTe~~MAiamA~~GGiGvIHrn~sie~qa~~V~kVKr~e~gmI--~dPVti~pd~TI~ea~~lm~~~  121 (493)
T Consensus       155 e~~lPvlstsYDTFTVAtm-IN~Al--------~n~lIKkd------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt  219 (432)
T COG4109         155 EKGLPVLSTSYDTFTVATM-INKAL--------SNQLIKKD------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKT  219 (432)
T ss_pred             CCCCCEEEECCCCEEHHHH-HHHHH--------HHHHHHHH------EEEHHHHCCCCCCCEECCCCCCHHHHHHHHHHC
T ss_conf             1488448704521309999-98998--------77666443------255877446443432324645099999999971


Q ss_pred             CCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEE
Q ss_conf             50416786688602788723545001434467244002678632573035899999998655330645747997868898
Q gi|254780889|r  122 SISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLIT  201 (493)
Q Consensus       122 ~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT  201 (493)
T Consensus       220 ~~sRfPVvn~~-~kvvGvVt~rDv~~-~~~~t~ieKVMtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiit  297 (432)
T COG4109         220 GHSRFPVVNRS-MKVVGVVTMRDVLD-KKPSTTIEKVMTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIIT  297 (432)
T ss_pred             CCCCCCEECCC-CEEEEEEEEHHHHC-CCCCCCHHHHHCCCCEEECCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEE
T ss_conf             98734133144-26999998346444-79986177774269755425226889988887645526568837861898988


Q ss_pred             ECCCHHCCCC
Q ss_conf             0210001017
Q gi|254780889|r  202 VKDIERSQLN  211 (493)
Q Consensus       202 ~~DIlk~~~~  211 (493)
T Consensus       298 R~dvlk~lq~  307 (432)
T COG4109         298 RQDVLKSLQM  307 (432)
T ss_pred             HHHHHHHHHH
T ss_conf             9999999987