HHsearch alignment for GI: 254780889 and conserved domain: PRK05437
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional.
Probab=99.79 E-value=1.1e-17 Score=146.33 Aligned_cols=147 Identities=29% Similarity=0.423 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHCCCCCEECCCC---CCHHHHHHHHHCCCCEEEEEECCCC-----CCCCCHH--------CCCCCCCCH
Q ss_conf 89999999998579872451464---6999999998548758996102787-----6653100--------015743100
Q gi|254780889|r 260 KVLDAVVQIKKNFPSLLVMAGNI---ATAEGALALIDAGADIIKVGIGPGS-----ICTTRVV--------TGVGCPQLS 323 (493)
Q Consensus 260 ~~~~~i~~~k~~~~~~~ii~GNv---~t~~~~~~l~~~Gad~ikvGig~Gs-----~CtTr~~--------~g~g~pq~~ 323 (493)
T Consensus 173 ~~l~~I~~i~~~~~-vPVIvKeVG~Gis~e~a~~l~~~Gv~~IdVs-g~GGTnf~~IE~~R~~~~~~~~~~~~wGipT~~ 250 (351)
T PRK05437 173 GWLDRIAEIVSALP-VPVIVKEVGFGISKETAKRLADAGVKAIDVA-GAGGTSWAAVENYRAKQRRLASYFADWGIPTAQ 250 (351)
T ss_pred HHHHHHHHHHHHCC-CCEEEEECCCCCCHHHHHHHHHCCCCEEEEC-CCCCCCHHHHHHHHHCCHHHHHHHHHCCCCHHH
T ss_conf 99999999998679-9889852157889999999996799999957-998855799998871021245777734866899
Q ss_pred HHHHHHHHHHCCCCEEEEECCCCCHHHHEEEEEECCCEEEECCHHHCCCCCCCCEEEECCEEEEEEECCCCHHHHHHCCH
Q ss_conf 37889998622698199726543777621336714878993230101216776448736805888733200688752212
Q gi|254780889|r 324 AIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVMIGSLLAGTDESPGDIFLYQGRSFKSYRGMGSVAAMERGSS 403 (493)
Q Consensus 324 av~~~~~~~~~~~~~iiadGGi~~~gdi~kAla~GA~~VM~G~~~agt~Espg~~~~~~g~~~K~yrGm~S~~A~~~~~~ 403 (493)
T Consensus 251 sL~e~~~~~--~~~~iiasGGIR~glDi~KaLaLGA~~vgia~p~L~~l~------------------------------ 298 (351)
T PRK05437 251 SLLEARSAL--PDLPIIASGGIRTGLDIAKALALGADAVGLAGPFLKAAL------------------------------ 298 (351)
T ss_pred HHHHHHHHC--CCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHH------------------------------
T ss_conf 999999747--998299627878789999999955107775899999998------------------------------
Q ss_pred HHHCCCCCCCCCCEECCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCC
Q ss_conf 22101233343310045402662105758998999999999855515758776897375
Q gi|254780889|r 404 ARYSQDGVTDVLKLVPEGIEGRVPYKGPIASVLHQMSGGLKSSMGYVGASNIEEFQKKA 462 (493)
Q Consensus 404 ~ry~~~~~~~~~k~v~eGv~~~v~~~G~~~~~~~~~~~glrs~~~y~G~~~i~e~~~~~ 462 (493)
T Consensus 299 ---------------~~g~e-------~~~~~l~~~~~elk~~M~L~G~~~i~eL~~~~ 335 (351)
T PRK05437 299 ---------------EGGVE-------AVIEEIEGWIEELKTAMFLTGAKNIAELRQVP 335 (351)
T ss_pred ---------------HCCHH-------HHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCC
T ss_conf ---------------56999-------99999999999999999986899899981799