HHsearch alignment for GI: 254780889 and conserved domain: cd02932
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.00 E-value=6.8e-05 Score=54.53 Aligned_cols=133 Identities=22% Similarity=0.349 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCHH------------------------HHHHHHHHHHHHHCCC-CCEE---------
Q ss_conf 15678999873136669982484113------------------------8899999999985798-7245---------
Q gi|254780889|r 233 DIADRVGPLFDVNVDLVVVDTAHGHS------------------------QKVLDAVVQIKKNFPS-LLVM--------- 278 (493)
Q Consensus 233 d~~eRa~~LveaGvDviviD~ahGh~------------------------~~~~~~i~~~k~~~~~-~~ii--------- 278 (493)
T Consensus 155 ~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~ 234 (336)
T cd02932 155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999999998399999863137479998369411677786799789998899999999999839988706896452357
Q ss_pred CCCCC---CHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEEE
Q ss_conf 14646---999999998548758996102787665310001574310037889998622698199726543777621336
Q gi|254780889|r 279 AGNIA---TAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAI 355 (493)
Q Consensus 279 ~GNv~---t~~~~~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi~kAl 355 (493)
T Consensus 235 ~~g~~~~e~~~~a~~l~~~gvd~i~vs~G~~~~~-~~~~~~---~~~~-~~~a~~ik~~~~ipvi~~G~i~~p~~ae~~l 309 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVSSGGNSPA-QKIPVG---PGYQ-VPFAERIRQEAGIPVIAVGLITDPEQAEAIL 309 (336)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCC---CCCC-HHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf 8998999999999999975997899558987766-667778---6426-7999999987898399979989999999999
Q ss_pred EEC-CCEEEECCHHHC
Q ss_conf 714-878993230101
Q gi|254780889|r 356 AAG-SACVMIGSLLAG 370 (493)
Q Consensus 356 a~G-A~~VM~G~~~ag 370 (493)
T Consensus 310 ~~G~~DlV~~gR~~ia 325 (336)
T cd02932 310 ESGRADLVALGRELLR 325 (336)
T ss_pred HCCCCEEHHHHHHHHH
T ss_conf 8799400686799997