HHsearch alignment for GI: 254780889 and conserved domain: cd02932

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=98.00  E-value=6.8e-05  Score=54.53  Aligned_cols=133  Identities=22%  Similarity=0.349  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHH------------------------HHHHHHHHHHHHHCCC-CCEE---------
Q ss_conf             15678999873136669982484113------------------------8899999999985798-7245---------
Q gi|254780889|r  233 DIADRVGPLFDVNVDLVVVDTAHGHS------------------------QKVLDAVVQIKKNFPS-LLVM---------  278 (493)
Q Consensus       233 d~~eRa~~LveaGvDviviD~ahGh~------------------------~~~~~~i~~~k~~~~~-~~ii---------  278 (493)
T Consensus       155 ~f~~AA~rA~~AGfDGVEIH~ahGYLl~qFLsp~~N~RtDeYGGs~enR~Rf~~Eii~aVr~~vg~d~~vgvRis~~d~~  234 (336)
T cd02932         155 AFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV  234 (336)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             99999999998399999863137479998369411677786799789998899999999999839988706896452357


Q ss_pred             CCCCC---CHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEEE
Q ss_conf             14646---999999998548758996102787665310001574310037889998622698199726543777621336
Q gi|254780889|r  279 AGNIA---TAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAI  355 (493)
Q Consensus       279 ~GNv~---t~~~~~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi~kAl  355 (493)
T Consensus       235 ~~g~~~~e~~~~a~~l~~~gvd~i~vs~G~~~~~-~~~~~~---~~~~-~~~a~~ik~~~~ipvi~~G~i~~p~~ae~~l  309 (336)
T cd02932         235 EGGWDLEDSVELAKALKELGVDLIDVSSGGNSPA-QKIPVG---PGYQ-VPFAERIRQEAGIPVIAVGLITDPEQAEAIL  309 (336)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCC-CCCCCC---CCCC-HHHHHHHHHHCCCCEEEECCCCCHHHHHHHH
T ss_conf             8998999999999999975997899558987766-667778---6426-7999999987898399979989999999999


Q ss_pred             EEC-CCEEEECCHHHC
Q ss_conf             714-878993230101
Q gi|254780889|r  356 AAG-SACVMIGSLLAG  370 (493)
Q Consensus       356 a~G-A~~VM~G~~~ag  370 (493)
T Consensus       310 ~~G~~DlV~~gR~~ia  325 (336)
T cd02932         310 ESGRADLVALGRELLR  325 (336)
T ss_pred             HCCCCEEHHHHHHHHH
T ss_conf             8799400686799997