HHsearch alignment for GI: 254780889 and conserved domain: cd04586
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.82 E-value=5e-20 Score=163.06 Aligned_cols=107 Identities=36% Similarity=0.611 Sum_probs=96.6
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC---------------------------CCCCC
Q ss_conf 287899465430345656676050416786688602788723545001---------------------------43446
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF---------------------------ASNAQ 152 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~---------------------------~~~~~ 152 (493)
T Consensus 2 ~~vitv~~~~tl~~a~~~m~~~~i~~lpVvd~~-~~lvGiit~~Dil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVDDD-GRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHG 80 (135)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC-CEEEEEEEHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHCCCCC
T ss_conf 999899993939999999997399679999089-9799999818976445415654114555430231034554304479
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 72440026786325730358999999986553306457479978688980210001
Q gi|254780889|r 153 QAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 153 ~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 81 ~~V~~iM~~~~~~v~~~~~l~~~~~~m~~~~i~~lpVvd-~~~lvGiIt~~DilkA 135 (135)
T cd04586 81 RKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLRA 135 (135)
T ss_pred CCHHHHCCCCCEEECCCCCHHHHHHHHHHCCCCEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf 898995789987995979599999999975960999999-9999999997996459