HHsearch alignment for GI: 254780889 and conserved domain: cd04598
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.67 E-value=1.8e-16 Score=137.49 Aligned_cols=106 Identities=26% Similarity=0.471 Sum_probs=94.8
Q ss_pred CCEEEECCCCHHHHHHHHHHH-CCCCEEEECCCCEEEEEEEEHHHHC------CCCC--CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 878994654303456566760-5041678668860278872354500------1434--467244002678632573035
Q gi|254780889|r 101 NPVTISPYATLADALALMKKY-SISGIPVVESDVGKLVGILTNRDVR------FASN--AQQAVGELMTRNLITVKKTVN 171 (493)
Q Consensus 101 dPVti~pd~TI~ea~~lm~~~-~is~iPVVD~~~gkLiGIVT~rDir------~~~~--~~~~V~eiMt~~litv~~~~~ 171 (493)
T Consensus 2 pv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd~--~r~vGiisr~dl~~~~~~~~g~~l~~~~pV~~~M~~~p~~v~~~~~ 79 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD--GRPVGLIMREALMELLSTPYGRALYGKKPVSEVMDPDPLIVEADTP 79 (119)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCCEEEEEEC--CEEEEEEEHHHHHHHHCCCCCHHHHCCCCHHHHCCCCCEEECCCCC
T ss_conf 98574999849999999987899676899879--9889999899999987074322330389589971689879989896
Q ss_pred HHHHHHHHHHCCCCEEE---EECCCCCEEEEEEECCCHHC
Q ss_conf 89999999865533064---57479978688980210001
Q gi|254780889|r 172 LENAKALLHQHRIEKLL---VVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 172 l~eA~~iM~~~ki~~LP---VVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 i~~~~~~~~~~~~~~l~~~ivV~~~g~~~Givt~~DLlr~ 119 (119)
T cd04598 80 LEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLRQ 119 (119)
T ss_pred HHHHHHHHHHCCCCCCCCCCEEEECCEEEEEEEHHHHHCC
T ss_conf 9999999985693325788589579989999898994079