>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

Probab=97.85  E-value=2.2e-05  Score=58.00  Aligned_cols=50  Identities=24%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHC-CCCEEEEECCCCCEEEEEEECCCHHCCCC
Q ss_conf             7863257303589999999865-53306457479978688980210001017
Q gi|254780889|r  161 RNLITVKKTVNLENAKALLHQH-RIEKLLVVDDDGCCIGLITVKDIERSQLN  211 (493)
Q Consensus       161 ~~litv~~~~~l~eA~~iM~~~-ki~~LPVVDe~g~LvGIIT~~DIlk~~~~  211 (493)
T Consensus         1 rpv~tv~pd~t~~ev~~~f~~~~~i~~lpVvd-~~r~vGiisr~dl~~~~~~   51 (119)
T cd04598           1 RPAPTVSPDTTVNDVLERFERDPDLSALAVVD-DGRPVGLIMREALMELLST   51 (119)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEE-CCEEEEEEEHHHHHHHHCC
T ss_conf             99857499984999999998789967689987-9988999989999998707