HHsearch alignment for GI: 254780889 and conserved domain: cd04599
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.84 E-value=1.1e-20 Score=167.78 Aligned_cols=104 Identities=41% Similarity=0.659 Sum_probs=97.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 28789946543034565667605041678668860278872354500143446724400267863257303589999999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALL 179 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM 179 (493)
T Consensus 1 rd~vtv~p~~tv~ea~~lM~~~~i~~lpVv~~--~~lvGivT~~Dl~~~-~~~~~v~~iMt~~~itv~~~~~l~~a~~~M 77 (105)
T cd04599 1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRA-HPNRLVADAMTREVVTISPEASLLEAKRLM 77 (105)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHCC-CCCCCHHHHCCCCCEEECCCCCHHHHHHHH
T ss_conf 99899689498999999998639988999999--999899981053127-888796885027989997949199999977
Q ss_pred HHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf 8655330645747997868898021000
Q gi|254780889|r 180 HQHRIEKLLVVDDDGCCIGLITVKDIER 207 (493)
Q Consensus 180 ~~~ki~~LPVVDe~g~LvGIIT~~DIlk 207 (493)
T Consensus 78 ~~~~i~~lpVvd-~g~lvGiiT~~Divr 104 (105)
T cd04599 78 EEKKIERLPVLR-ERKLVGIITKGTIAL 104 (105)
T ss_pred HHCCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf 985997999998-999999999458615