HHsearch alignment for GI: 254780889 and conserved domain: cd04599

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.84  E-value=1.1e-20  Score=167.78  Aligned_cols=104  Identities=41%  Similarity=0.659  Sum_probs=97.1

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             28789946543034565667605041678668860278872354500143446724400267863257303589999999
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALL  179 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM  179 (493)
T Consensus         1 rd~vtv~p~~tv~ea~~lM~~~~i~~lpVv~~--~~lvGivT~~Dl~~~-~~~~~v~~iMt~~~itv~~~~~l~~a~~~M   77 (105)
T cd04599           1 RDPITIDPLDSVGRAARLMEKHRIGGLPVVED--GKLVGIITSRDVRRA-HPNRLVADAMTREVVTISPEASLLEAKRLM   77 (105)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHCC-CCCCCHHHHCCCCCEEECCCCCHHHHHHHH
T ss_conf             99899689498999999998639988999999--999899981053127-888796885027989997949199999977


Q ss_pred             HHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf             8655330645747997868898021000
Q gi|254780889|r  180 HQHRIEKLLVVDDDGCCIGLITVKDIER  207 (493)
Q Consensus       180 ~~~ki~~LPVVDe~g~LvGIIT~~DIlk  207 (493)
T Consensus        78 ~~~~i~~lpVvd-~g~lvGiiT~~Divr  104 (105)
T cd04599          78 EEKKIERLPVLR-ERKLVGIITKGTIAL  104 (105)
T ss_pred             HHCCCCEEEEEE-CCEEEEEEECHHHCC
T ss_conf             985997999998-999999999458615