HHsearch alignment for GI: 254780889 and conserved domain: cd04604

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.79  E-value=5.1e-19  Score=155.84  Aligned_cols=107  Identities=34%  Similarity=0.497  Sum_probs=97.3

Q ss_pred             CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC-----CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             87899465430345656676050416786688602788723545001-----4344672440026786325730358999
Q gi|254780889|r  101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF-----ASNAQQAVGELMTRNLITVKKTVNLENA  175 (493)
Q Consensus       101 dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~-----~~~~~~~V~eiMt~~litv~~~~~l~eA  175 (493)
T Consensus         3 ~vp~V~~~~si~ea~~~m~~~~~~~v~Vvd~~-~~lvGiiT~~Dl~r~~~~~~~~~~~~v~~iM~~~~~tv~~~~~i~~a   81 (114)
T cd04604           3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-GRLVGIFTDGDLRRALEKGLDILTLPVADVMTRNPKTIDPDALAAEA   81 (114)
T ss_pred             CCCEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCEEEECCCCHHHH
T ss_conf             47788994939999999997699789999799-93999998999999987166645679747435675899389886999


Q ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             999986553306457479978688980210001
Q gi|254780889|r  176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        82 ~~~m~~~~i~~lpVvd~~~~~vGiit~~DllkA  114 (114)
T cd04604          82 LELMEENKITALPVVDDNGRPVGVLHIHDLLRA  114 (114)
T ss_pred             HHHHHHCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf             999987795799999899989999988995469