HHsearch alignment for GI: 254780889 and conserved domain: cd04605
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.83 E-value=2.1e-20 Score=165.78 Aligned_cols=108 Identities=37% Similarity=0.552 Sum_probs=100.3
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 28789946543034565667605041678668860278872354500-14344672440026786325730358999999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-FASNAQQAVGELMTRNLITVKKTVNLENAKAL 178 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~~~~~~~~V~eiMt~~litv~~~~~l~eA~~i 178 (493)
T Consensus 2 r~vvtv~~~~tv~~a~~~m~~~~~~~lpVvd~~-~~~vGiit~~Di~~~~~~~~~~v~~im~~~~~~~~~~~~~~~a~~~ 80 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDED-GRLVGIVTSWDISKAVARDKKSVEDIMTRNVITATPDEPIDVAARK 80 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEECHHHHHHHHCCCCCHHHCEEECHHHHHHHHHHHHHHHH
T ss_conf 899898993999999999997299889999799-9199999622788898707976336043001201465589999999
Q ss_pred HHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 986553306457479978688980210001
Q gi|254780889|r 179 LHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 179 M~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 81 m~~~~i~~lPVvD~~~~lvGiiT~~Di~kl 110 (110)
T cd04605 81 MERHNISALPVVDAENRVIGIITSEDISKL 110 (110)
T ss_pred HHHCCCEEEEEECCCCEEEEEEEHHHHCCC
T ss_conf 998396199999189989999993772119