HHsearch alignment for GI: 254780889 and conserved domain: cd04608

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.59  E-value=4.4e-15  Score=127.62  Aligned_cols=108  Identities=21%  Similarity=0.339  Sum_probs=93.3

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-----CCCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf             28789946543034565667605041678668860278872354500-----1434467244002678632573035899
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-----FASNAQQAVGELMTRNLITVKKTVNLEN  174 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-----~~~~~~~~V~eiMt~~litv~~~~~l~e  174 (493)
T Consensus         2 ~~~vtv~p~~tv~~a~~~m~~~~i~~lPVvd~~-g~~~G~vt~~~ll~~~~~~~~~~~~~V~~vm~~~~~~v~~~~~l~~   80 (124)
T cd04608           2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDES-GKILGMVTLGNLLSSLSSGKVQPSDPVSKALYKQFKRVNKNDTLGK   80 (124)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCCCCCHHH
T ss_conf             999798998909999999998499856898799-9688888799999999738999998289974465651479985567


Q ss_pred             HH---------HHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             99---------99986553306457479978688980210001
Q gi|254780889|r  175 AK---------ALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       175 A~---------~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        81 ls~~l~~~~~~lvv~~~~~~~~~v~~~~~k~vGIvTr~DLL~y  123 (124)
T cd04608          81 LSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY  123 (124)
T ss_pred             HHCCCCCCHHHHHHHHHHCCCCCCCCCCCEEEEEEEHHHHHHH
T ss_conf             3103673278999998602567627779989999867997703