HHsearch alignment for GI: 254780889 and conserved domain: cd04613
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.81 E-value=1.3e-19 Score=160.14 Aligned_cols=108 Identities=29% Similarity=0.423 Sum_probs=98.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCCC-----CCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 2878994654303456566760504167866886027887235450014-----34467244002678632573035899
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFA-----SNAQQAVGELMTRNLITVKKTVNLEN 174 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~~-----~~~~~~V~eiMt~~litv~~~~~l~e 174 (493)
T Consensus 1 rdvvtv~~~~tl~ea~~~m~~~~~~~~pVvd~~-~~lvGiit~~Dl~~~l~~~~~~~~~~v~~im~~~~~~v~~~~~l~~ 79 (114)
T cd04613 1 RDVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-GRLVGIVSLDDIREILFDPSLYDLVVASDIMTKPPVVVYPEDSLED 79 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHHCCCCCCCEEEHHCCCCCEEEECCCCHHH
T ss_conf 997695890989999999986199789999289-9499999999999999705665572931203629659913678899
Q ss_pred HHHHHHHCCCCEEEEECC-CCCEEEEEEECCCHHC
Q ss_conf 999998655330645747-9978688980210001
Q gi|254780889|r 175 AKALLHQHRIEKLLVVDD-DGCCIGLITVKDIERS 208 (493)
Q Consensus 175 A~~iM~~~ki~~LPVVDe-~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 a~~~m~~~~~~~lPVVd~~~g~lvGiit~~Dil~A 114 (114)
T cd04613 80 ALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLSA 114 (114)
T ss_pred HHHHHHHCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 99999975975999998999989999998995359