HHsearch alignment for GI: 254780889 and conserved domain: cd04615
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.83 E-value=2.5e-20 Score=165.25 Aligned_cols=107 Identities=31% Similarity=0.438 Sum_probs=98.6
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC--CCC---CCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 8789946543034565667605041678668860278872354500--143---44672440026786325730358999
Q gi|254780889|r 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR--FAS---NAQQAVGELMTRNLITVKKTVNLENA 175 (493)
Q Consensus 101 dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir--~~~---~~~~~V~eiMt~~litv~~~~~l~eA 175 (493)
T Consensus 2 ~P~tv~~d~~l~~A~~~m~~~~~~~~pVvd~~-~~lvGivT~~Di~~~~~~~~~~~~~~v~~iMt~~~~ti~~~~~l~~a 80 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK-KRLVGIITRYDVLSYALESEELKDAKVREVMNSPVITIDANDSIAKA 80 (113)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CEEEEEEEHHHHHHHHHHCCCCCCCCHHHHCCCCCEEEECCCCHHHH
T ss_conf 59598996999999999997399789999489-97999999599999998079824589999275697899089939999
Q ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 999986553306457479978688980210001
Q gi|254780889|r 176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 81 ~~~m~~~~i~~lpVvd~~g~lvGiit~~Dilr~ 113 (113)
T cd04615 81 RWLMSNNNISRLPVLDDKGKVGGIVTEDDILRK 113 (113)
T ss_pred HHHHHHHCCEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 999997499489999799939999996883269