HHsearch alignment for GI: 254780889 and conserved domain: cd04617
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.85 E-value=2.6e-21 Score=172.29 Aligned_cols=107 Identities=29% Similarity=0.428 Sum_probs=96.8
Q ss_pred CCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC-----CCCCCCCCCCCCCC--CCCCCCCCCCHH
Q ss_conf 87899465430345656676050416786688602788723545001-----43446724400267--863257303589
Q gi|254780889|r 101 NPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF-----ASNAQQAVGELMTR--NLITVKKTVNLE 173 (493)
Q Consensus 101 dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~-----~~~~~~~V~eiMt~--~litv~~~~~l~ 173 (493)
T Consensus 2 pPvtv~~~~si~eA~~~M~~~~ig~l~VVD~~-~~LvGIiT~rDl~r~~~~~~~~~~~pV~~iMT~~P~vvt~~pd~~v~ 80 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-GDLVGVVSRKDLLKASIGGADLQKVPVGVIMTRMPNITTTTPEESVL 80 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCCCCCCCHHHHHCCCCCEEEECCCCCHH
T ss_conf 79798996999999999998399879998499-95999987899999997489846782999857799719978999399
Q ss_pred HHHHHHHHCCCCEEEEECCCC---CEEEEEEECCCHHC
Q ss_conf 999999865533064574799---78688980210001
Q gi|254780889|r 174 NAKALLHQHRIEKLLVVDDDG---CCIGLITVKDIERS 208 (493)
Q Consensus 174 eA~~iM~~~ki~~LPVVDe~g---~LvGIIT~~DIlk~ 208 (493)
T Consensus 81 ~A~~~M~~~~i~~LPVVd~~~~~~~vvGiIT~~Di~kl 118 (118)
T cd04617 81 EAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITKL 118 (118)
T ss_pred HHHHHHHHCCCCEECEEECCCCCEEEEEEEECCCEECC
T ss_conf 99999998299985679439974089999977515049