HHsearch alignment for GI: 254780889 and conserved domain: cd04617
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=98.46 E-value=2e-07 Score=72.65 Aligned_cols=47 Identities=26% Similarity=0.472 Sum_probs=32.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 86325730358999999986553306457479978688980210001
Q gi|254780889|r 162 NLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 162 ~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 2 pPvtv~~~~si~eA~~~M~~~~ig~l~VVD~~~~LvGIiT~rDl~r~ 48 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKA 48 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEEHHHHHHH
T ss_conf 79798996999999999998399879998499959999878999999