HHsearch alignment for GI: 254780889 and conserved domain: cd04622
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.82 E-value=4.1e-20 Score=163.68 Aligned_cols=107 Identities=36% Similarity=0.687 Sum_probs=97.9
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHH--CC----CCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 2878994654303456566760504167866886027887235450--01----43446724400267863257303589
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDV--RF----ASNAQQAVGELMTRNLITVKKTVNLE 173 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDi--r~----~~~~~~~V~eiMt~~litv~~~~~l~ 173 (493)
T Consensus 1 r~~vti~~~~tl~~a~~~m~~~~~~~v~V~d~--~~~vGiiT~~Di~~~~~~~~~~~~~~~v~~iM~~~~i~v~~~~~l~ 78 (113)
T cd04622 1 RDVVTVSPDDTIREAARLMREHDVGALPVCEN--DRLVGIVTDRDIVVRAVAEGRDPDTTTVGDVMTRGVVTVTEDDDVD 78 (113)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEEEC--CEEEEEEECHHHHHHHHHCCCCHHHCCHHHHHCCCCEEEECCCCHH
T ss_conf 99779689398999999999729988999989--9999999632788999973998200776786415767998899879
Q ss_pred HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 99999986553306457479978688980210001
Q gi|254780889|r 174 NAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 174 eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 79 ~a~~~m~~~~i~~lpVvd~~~~~vGiIt~~Dilra 113 (113)
T cd04622 79 EAARLMREHQVRRLPVVDDDGRLVGIVSLGDLARA 113 (113)
T ss_pred HHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHHCC
T ss_conf 99999985796589999089989999997995477