HHsearch alignment for GI: 254780889 and conserved domain: cd04623

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81  E-value=1.1e-19  Score=160.77  Aligned_cols=107  Identities=37%  Similarity=0.607  Sum_probs=97.7

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-C-----CCCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf             28789946543034565667605041678668860278872354500-1-----43446724400267863257303589
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-F-----ASNAQQAVGELMTRNLITVKKTVNLE  173 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~-----~~~~~~~V~eiMt~~litv~~~~~l~  173 (493)
T Consensus         1 r~vvti~~~~tl~ea~~~m~~~~~~~l~Vvd~~-~~l~Giit~~Di~~~~~~~~~~~~~~~V~~iM~~~~~~v~~~~~l~   79 (113)
T cd04623           1 RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-GRLVGIFSERDIVRKVALRGASALDTPVSEIMTRNVITVTPDDTVD   79 (113)
T ss_pred             CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHHCCCCHHHCHHHHHCCCEEEEEECCCCHH
T ss_conf             997696893979999999997399889999089-8299999768999999864998466401231211028991699199


Q ss_pred             HHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             99999986553306457479978688980210001
Q gi|254780889|r  174 NAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       174 eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        80 ~a~~~m~~~~i~~lpV~d-~~~lvGiit~~Dllra  113 (113)
T cd04623          80 EAMALMTERRFRHLPVVD-GGKLVGIVSIGDVVKA  113 (113)
T ss_pred             HHHHHHHHCCCEEEEEEE-CCEEEEEEEHHHHHCC
T ss_conf             999999976925999999-9999999997996469