HHsearch alignment for GI: 254780889 and conserved domain: cd04626

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81  E-value=1.7e-19  Score=159.21  Aligned_cols=107  Identities=28%  Similarity=0.391  Sum_probs=97.6

Q ss_pred             CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf             287899465430345656676050416786688602788723545001----4344672440026786325730358999
Q gi|254780889|r  100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF----ASNAQQAVGELMTRNLITVKKTVNLENA  175 (493)
Q Consensus       100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~----~~~~~~~V~eiMt~~litv~~~~~l~eA  175 (493)
T Consensus         1 tdv~tv~~~~tl~eA~~~m~~~~~~~~~Vvd~~-~~l~GIiT~~Di~~~~~~~~~~~~~V~~iMt~~~itv~~~~~~~~a   79 (111)
T cd04626           1 TDFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA   79 (111)
T ss_pred             CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCCCHHHHCCCCCEEECCCCCHHHH
T ss_conf             997399962939999999998499889999699-9799999949999998526877888899606998799997939999


Q ss_pred             HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf             999986553306457479978688980210001
Q gi|254780889|r  176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERS  208 (493)
Q Consensus       176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~  208 (493)
T Consensus        80 ~~~M~~~~i~~LPVvd-~~klvGiit~~Dil~k  111 (111)
T cd04626          80 LDIMREKQIGRLPVVD-DNKLIGVVRTKDILDK  111 (111)
T ss_pred             HHHHHHHCCCEEEEEE-CCEEEEEEEHHHHCCC
T ss_conf             9999980998899999-9999999996981488