HHsearch alignment for GI: 254780889 and conserved domain: cd04626
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.81 E-value=1.7e-19 Score=159.21 Aligned_cols=107 Identities=28% Similarity=0.391 Sum_probs=97.6
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC----CCCCCCCCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 287899465430345656676050416786688602788723545001----4344672440026786325730358999
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF----ASNAQQAVGELMTRNLITVKKTVNLENA 175 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~----~~~~~~~V~eiMt~~litv~~~~~l~eA 175 (493)
T Consensus 1 tdv~tv~~~~tl~eA~~~m~~~~~~~~~Vvd~~-~~l~GIiT~~Di~~~~~~~~~~~~~V~~iMt~~~itv~~~~~~~~a 79 (111)
T cd04626 1 TDFPTIDEDASIREALHEMLKYNTNEIIVKDNE-EKLKGVVTFTDILDLDLFESFLEKKVFNIVSQDVFYVNEEDTIDEA 79 (111)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCC-CEEEEEEEHHHHHHHHHCCCCCCCCHHHHCCCCCEEECCCCCHHHH
T ss_conf 997399962939999999998499889999699-9799999949999998526877888899606998799997939999
Q ss_pred HHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 999986553306457479978688980210001
Q gi|254780889|r 176 KALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 176 ~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 ~~~M~~~~i~~LPVvd-~~klvGiit~~Dil~k 111 (111)
T cd04626 80 LDIMREKQIGRLPVVD-DNKLIGVVRTKDILDK 111 (111)
T ss_pred HHHHHHHCCCEEEEEE-CCEEEEEEEHHHHCCC
T ss_conf 9999980998899999-9999999996981488