HHsearch alignment for GI: 254780889 and conserved domain: cd04629
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.49 E-value=6.2e-07 Score=69.16 Aligned_cols=49 Identities=27% Similarity=0.389 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHCC
Q ss_conf 7863257303589999999865533064574799786889802100010
Q gi|254780889|r 161 RNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERSQ 209 (493)
Q Consensus 161 ~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~~ 209 (493)
T Consensus 1 r~pvtv~~~~tl~~a~~~m~~~~~~~~pVvd~~~~lvGiit~~Dll~~~ 49 (114)
T cd04629 1 RNPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQL 49 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHHHH
T ss_conf 9899979929999999999971997899994899299999678999999