HHsearch alignment for GI: 254780889 and conserved domain: cd04632
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.85 E-value=4.9e-21 Score=170.31 Aligned_cols=108 Identities=27% Similarity=0.446 Sum_probs=97.9
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC--CC----------------CCCCCCCCCCCCC
Q ss_conf 28789946543034565667605041678668860278872354500--14----------------3446724400267
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR--FA----------------SNAQQAVGELMTR 161 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir--~~----------------~~~~~~V~eiMt~ 161 (493)
T Consensus 1 kdvvTv~~~~~l~~a~~lm~~~~i~~lPVvd~~-g~lvGiiT~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iM~~ 79 (128)
T cd04632 1 EDVITVREDDSVGKAINVLREHGISRLPVVDDN-GKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAMSS 79 (128)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCCEEEEECCC-CCEEEEEEHHHHHHHHHCCCHHCCHHHHCCHHHHHHCCCHHHHCCC
T ss_conf 998698995929999999998399779999689-9789999889999988532101011221001223406799996679
Q ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEEE--CCCCCEEEEEEECCCHHC
Q ss_conf 86325730358999999986553306457--479978688980210001
Q gi|254780889|r 162 NLITVKKTVNLENAKALLHQHRIEKLLVV--DDDGCCIGLITVKDIERS 208 (493)
Q Consensus 162 ~litv~~~~~l~eA~~iM~~~ki~~LPVV--De~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 ~vitv~~~~~i~~a~~~M~~~~i~~lpVv~~dd~~~lvGIiT~~DilrA 128 (128)
T cd04632 80 PVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9879999293999999999779978966847899989999996996469