HHsearch alignment for GI: 254780889 and conserved domain: cd04633
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.79 E-value=5.2e-19 Score=155.82 Aligned_cols=105 Identities=36% Similarity=0.549 Sum_probs=94.6
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHCC-C--------------CCCCCCCCCCCCCCCC
Q ss_conf 287899465430345656676050416786688602788723545001-4--------------3446724400267863
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRF-A--------------SNAQQAVGELMTRNLI 164 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir~-~--------------~~~~~~V~eiMt~~li 164 (493)
T Consensus 1 r~vvtv~~~~tl~ea~~~m~~~~i~~lpVvd~--~~~vGiiT~~Di~~~l~~~~~~~~~~~~~~~~~~~~V~~iM~~~~~ 78 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIEG--GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIMTRPVI 78 (121)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEEC--CEEEEEEEHHHHHHHHHHCCCCCCCHHHCCCCCCCEEECCCCCCCE
T ss_conf 99479799398999999999709988999989--9988787599999999744653320110245136685533437988
Q ss_pred CCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHH
Q ss_conf 2573035899999998655330645747997868898021000
Q gi|254780889|r 165 TVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIER 207 (493)
Q Consensus 165 tv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk 207 (493)
T Consensus 79 tv~~~~~l~~~~~~m~~~~~~~lpVvd~-~~lvGIIT~~Dilr 120 (121)
T cd04633 79 TIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred EEECCCCHHHHHHHHHHHCCEEEEEEEC-CEEEEEEEHHHHHC
T ss_conf 9909898999999989719859999989-99999998346028