HHsearch alignment for GI: 254780889 and conserved domain: cd04635
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.86 E-value=2.2e-21 Score=172.80 Aligned_cols=108 Identities=28% Similarity=0.518 Sum_probs=98.1
Q ss_pred CCCEEEECCCCHHHHHHHHHHHCCCCEEEECCCCEEEEEEEEHHHHC-C-------------CCCCCCCCCCCCCCCCCC
Q ss_conf 28789946543034565667605041678668860278872354500-1-------------434467244002678632
Q gi|254780889|r 100 VNPVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVR-F-------------ASNAQQAVGELMTRNLIT 165 (493)
Q Consensus 100 ~dPVti~pd~TI~ea~~lm~~~~is~iPVVD~~~gkLiGIVT~rDir-~-------------~~~~~~~V~eiMt~~lit 165 (493)
T Consensus 1 r~vitv~~d~~l~~a~~~m~~~~i~~lPVVd~~-g~lvGiit~~Dll~~~~~~~~~~~~~~~~~~~~~~v~~iM~~~~it 79 (122)
T cd04635 1 REPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-GELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIMSTPVYS 79 (122)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECC-CCEEEEEEHHHHHHHHHHCCCCHHHHHCCCCCCCCHHHHCCCCCEE
T ss_conf 999996892979999999997199489999189-8299999989987655400120034431453468999968689879
Q ss_pred CCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 5730358999999986553306457479978688980210001
Q gi|254780889|r 166 VKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 166 v~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 80 v~~~~~l~~a~~~m~~~~i~~lpVvd~~g~lvGiIt~~DilrA 122 (122)
T cd04635 80 VTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLKA 122 (122)
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEEECCCCEEEEEEEHHHHHCC
T ss_conf 9896939999998898099889899379989999997996369