HHsearch alignment for GI: 254780889 and conserved domain: cd04730
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.87 E-value=1.8e-20 Score=166.26 Aligned_cols=196 Identities=24% Similarity=0.382 Sum_probs=144.1
Q ss_pred ECCCEEEECCCCCCCHHHHHHHHHCCCEEEE-CCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCCHHHHHHHHHHHCC
Q ss_conf 0031783378523688899999977987999-789898999999998742238815287899465430345656676050
Q gi|254780889|r 45 LNLPIMSAAMDQVTDSRLAIAMAQAGGLGVI-HRNFSPSEQVAQVHQVKKFESGMVVNPVTISPYATLADALALMKKYSI 123 (493)
Q Consensus 45 l~iPivSs~MDTVTe~~MAiamA~~GGiGvI-Hrn~sie~qa~~V~kVKr~e~gmI~dPVti~pd~TI~ea~~lm~~~~i 123 (493)
T Consensus 1 i~~PIi~a~M~~vs~~~LaaAvs~aGglG~l~~~~~~~~~l~~~i~~~~~~~---------------------------- 52 (236)
T cd04730 1 IRYPIIQAPMAGVSTPELAAAVSNAGGLGFIGAGYLTPEALRAEIRKIRALT---------------------------- 52 (236)
T ss_pred CCCCEECCCCCCCCCHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC----------------------------
T ss_conf 9748687887787869999999968985585788899999999999999746----------------------------
Q ss_pred CCEEEECCCCEEEEEEEEHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEEC
Q ss_conf 41678668860278872354500143446724400267863257303589999999865533064574799786889802
Q gi|254780889|r 124 SGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMTRNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVK 203 (493)
Q Consensus 124 s~iPVVD~~~gkLiGIVT~rDir~~~~~~~~V~eiMt~~litv~~~~~l~eA~~iM~~~ki~~LPVVDe~g~LvGIIT~~ 203 (493)
T Consensus 53 ----------~~pfgv----------------------nl~~~~~----------------------------------- 65 (236)
T cd04730 53 ----------DKPFGV----------------------NLLVPSS----------------------------------- 65 (236)
T ss_pred ----------CCCEEE----------------------CCCCCCC-----------------------------------
T ss_conf ----------997244----------------------3324677-----------------------------------
Q ss_pred CCHHCCCCCCCCCCCCCCEEEEEEEECCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEECCCCC
Q ss_conf 10001017422326568765556651370156789998731366699824841138899999999985798724514646
Q gi|254780889|r 204 DIERSQLNPNATKDSKGRLRVAAAVSVAKDIADRVGPLFDVNVDLVVVDTAHGHSQKVLDAVVQIKKNFPSLLVMAGNIA 283 (493)
Q Consensus 204 DIlk~~~~p~A~~D~~grL~VgAAIg~~~d~~eRa~~LveaGvDviviD~ahGh~~~~~~~i~~~k~~~~~~~ii~GNv~ 283 (493)
T Consensus 66 ---------------------------~~~~~~~~~~~~~~~v~~v~~--~~g~p~~---~v~~l~~~--g~~-v~~~v~ 110 (236)
T cd04730 66 ---------------------------NPDFEALLEVALEEGVPVVSF--SFGPPAE---VVERLKAA--GIK-VIPTVT 110 (236)
T ss_pred ---------------------------CCCHHHHHHHHHHCCCCEEEE--CCCCCHH---HHHHHHHC--CCE-EEEECC
T ss_conf ---------------------------636899999999769999998--7989789---99999982--998-999589
Q ss_pred CHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHEEEEEECCCEEE
Q ss_conf 99999999854875899610278766531000157431003788999862269819972654377762133671487899
Q gi|254780889|r 284 TAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIAKAIAAGSACVM 363 (493)
Q Consensus 284 t~~~~~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi~kAla~GA~~VM 363 (493)
T Consensus 111 s~~~A~~a~~~GaD~iv~-qG~eAGGH~g---~~~~~~~~lv~~v~~~---~~ipviaAGGI~~g~~i~aal~lGA~gV~ 183 (236)
T cd04730 111 SVEEARKAEAAGADALVA-QGAEAGGHRG---TFDIGTFALVPEVRDA---VDIPVIAAGGIADGRGIAAALALGADGVQ 183 (236)
T ss_pred CHHHHHHHHHCCCCEEEE-ECCCCCCCCC---CCCCCHHHHHHHHHHH---HCCCEEEECCCCCHHHHHHHHHHCCCEEE
T ss_conf 899999999818998999-7777777889---8755567799999998---29868965462778999999980897999
Q ss_pred ECCHHHCCCCCCCC
Q ss_conf 32301012167764
Q gi|254780889|r 364 IGSLLAGTDESPGD 377 (493)
Q Consensus 364 ~G~~~agt~Espg~ 377 (493)
T Consensus 184 ~GTrfl~t~Es~~~ 197 (236)
T cd04730 184 MGTRFLATEESGAS 197 (236)
T ss_pred ECCHHHHCCCCCCC
T ss_conf 55385708454799