HHsearch alignment for GI: 254780889 and conserved domain: cd04734
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=98.30 E-value=5.8e-06 Score=62.21 Aligned_cols=141 Identities=20% Similarity=0.248 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCH------------------------HHHHHHHHHHHHHHCCCCCEECCC-------
Q ss_conf 1567899987313666998248411------------------------388999999999857987245146-------
Q gi|254780889|r 233 DIADRVGPLFDVNVDLVVVDTAHGH------------------------SQKVLDAVVQIKKNFPSLLVMAGN------- 281 (493)
Q Consensus 233 d~~eRa~~LveaGvDviviD~ahGh------------------------~~~~~~~i~~~k~~~~~~~ii~GN------- 281 (493)
T Consensus 142 ~f~~AA~~A~~AGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~EIi~~Ir~~vg~~f~i~~Ris~~~~~ 221 (343)
T cd04734 142 AFADAARRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDEDT 221 (343)
T ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99999999997399889844577746998469855899676798889998999999999999819877615886762356
Q ss_pred --CCCH----HHHHHHHHCC-CCEEEEEECCCC--CCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHE
Q ss_conf --4699----9999998548-758996102787--665310001574310037889998622698199726543777621
Q gi|254780889|r 282 --IATA----EGALALIDAG-ADIIKVGIGPGS--ICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDIA 352 (493)
Q Consensus 282 --v~t~----~~~~~l~~~G-ad~ikvGig~Gs--~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi~ 352 (493)
T Consensus 222 ~~g~~~~e~~~~~~~l~~~G~vD~l~vs~g~~~~~~~~~~~~p~~~~~~g~~~~~a~~ik~~~~~pvi~~G~i~~~~~ae 301 (343)
T cd04734 222 EGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVDLPVFHAGRIRDPAEAE 301 (343)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHH
T ss_conf 89899899999999999669976899656754332221100687667764348899999997298599979989999999
Q ss_pred EEEEEC-CCEEEECCHHHCCCC
Q ss_conf 336714-878993230101216
Q gi|254780889|r 353 KAIAAG-SACVMIGSLLAGTDE 373 (493)
Q Consensus 353 kAla~G-A~~VM~G~~~agt~E 373 (493)
T Consensus 302 ~~l~~g~~D~V~~gR~~ladPd 323 (343)
T cd04734 302 QALAAGHADMVGMTRAHIADPH 323 (343)
T ss_pred HHHHCCCCEEHHHHHHHHHCCC
T ss_conf 9998799621697899997811