HHsearch alignment for GI: 254780889 and conserved domain: cd04735

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.05  E-value=3.6e-05  Score=56.52  Aligned_cols=136  Identities=19%  Similarity=0.221  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHCCCCEEEEECCCCHH------------------------HHHHHHHHHHHHHCC-----CCCE------
Q ss_conf             15678999873136669982484113------------------------889999999998579-----8724------
Q gi|254780889|r  233 DIADRVGPLFDVNVDLVVVDTAHGHS------------------------QKVLDAVVQIKKNFP-----SLLV------  277 (493)
Q Consensus       233 d~~eRa~~LveaGvDviviD~ahGh~------------------------~~~~~~i~~~k~~~~-----~~~i------  277 (493)
T Consensus       145 ~f~~AA~rA~~AGfDgVEiH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~vg~~~~~df~vgvRis~  224 (353)
T cd04735         145 AFGEATRRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP  224 (353)
T ss_pred             HHHHHHHHHHHCCCCEEEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCH
T ss_conf             99999999998399989975465759998539988998473679889998899999999999854005897336751586


Q ss_pred             ---ECCCCC---CHHHHHHHHHCCCCEEEEEECCCCCCCCCHHCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHH
Q ss_conf             ---514646---99999999854875899610278766531000157431003788999862269819972654377762
Q gi|254780889|r  278 ---MAGNIA---TAEGALALIDAGADIIKVGIGPGSICTTRVVTGVGCPQLSAIMSVVEVAERAGVAIVADGGIRFSGDI  351 (493)
Q Consensus       278 ---i~GNv~---t~~~~~~l~~~Gad~ikvGig~Gs~CtTr~~~g~g~pq~~av~~~~~~~~~~~~~iiadGGi~~~gdi  351 (493)
T Consensus       225 ~e~~~~G~~~~e~~~~~~~l~~~gvD~l~vs~g~--~~~~~~---~~~~~~~~~~~~~~~~~~~~iPvi~~G~i~~~~~a  299 (353)
T cd04735         225 EEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD--FDRKSR---RGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDA  299 (353)
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCC--CCCCCC---CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCHHHH
T ss_conf             5414799999999999999984799889960377--667776---67775355899999996789809998999989999


Q ss_pred             EEEEEECCCEEEECCHHHCCCC
Q ss_conf             1336714878993230101216
Q gi|254780889|r  352 AKAIAAGSACVMIGSLLAGTDE  373 (493)
Q Consensus       352 ~kAla~GA~~VM~G~~~agt~E  373 (493)
T Consensus       300 e~~l~~gaD~V~~gR~liadPd  321 (353)
T cd04735         300 LEALETGADLVAIGRGLLVDPD  321 (353)
T ss_pred             HHHHHCCCCHHHHHHHHHHCHH
T ss_conf             9999869982998699997931