HHsearch alignment for GI: 254780889 and conserved domain: cd04801
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.12 E-value=1.2e-05 Score=59.87 Aligned_cols=48 Identities=23% Similarity=0.420 Sum_probs=36.4
Q ss_pred CCCCCCCCCCCHHHHHHH-HHHCCCCEEEEECCCCCEEEEEEECCCHHC
Q ss_conf 786325730358999999-986553306457479978688980210001
Q gi|254780889|r 161 RNLITVKKTVNLENAKAL-LHQHRIEKLLVVDDDGCCIGLITVKDIERS 208 (493)
Q Consensus 161 ~~litv~~~~~l~eA~~i-M~~~ki~~LPVVDe~g~LvGIIT~~DIlk~ 208 (493)
T Consensus 1 Rdv~tv~~~~tl~e~~~~~~~~~~~~~~pVvd~~g~l~Givt~~dl~~~ 49 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAI 49 (114)
T ss_pred CCCEEECCCCCHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEHHHHHHH
T ss_conf 9955849999599999999850796689998789979999999998754