RPSBLAST alignment for GI: 254780889 and conserved domain: cd04642
>gnl|CDD|73140 cd04642, CBS_pair_29, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase).. Length = 126
Score = 59.1 bits (143), Expect = 3e-09
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 19/122 (15%)
Query: 102 PVTISPYATLADALALMKKYSISGIPVVESDVGKLVGILTNRDVRFASNAQQAVGELMT- 160
V+I + DA LM+K +ISG+PVV+ GKL+G ++ D++ + + T
Sbjct: 3 VVSIDSDERVLDAFKLMRKNNISGLPVVDEK-GKLIGNISASDLKGLLLSPDDLLLYRTI 61
Query: 161 -----------------RNLITVKKTVNLENAKALLHQHRIEKLLVVDDDGCCIGLITVK 203
R LIT + L+ L +++ ++ VVD++G IG+IT+
Sbjct: 62 TFKELSEKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLT 121
Query: 204 DI 205
DI
Sbjct: 122 DI 123