BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
         (104 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254040567|gb|ACT57363.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 104

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 104/104 (100%), Positives = 104/104 (100%)

Query: 1   MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60
           MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF
Sbjct: 1   MFYDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVF 60

Query: 61  REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104
           REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS
Sbjct: 61  REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIERDS 104


>gi|315122693|ref|YP_004063182.1| hypothetical protein CKC_04725 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313496095|gb|ADR52694.1| hypothetical protein CKC_04725 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 100

 Score = 87.4 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/98 (50%), Positives = 73/98 (74%)

Query: 5   SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGE 64
           S  K   LES+V+++IRLQIEEI  IL+++ ++  ++E+ TK+Y++TARIIAL   REG+
Sbjct: 3   STRKNDCLESKVIYSIRLQIEEIFKILTQEKKEISDKELYTKMYLVTARIIALTALREGK 62

Query: 65  KSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIER 102
           KS IF  L+ N+K +S LTQ  +QEIDTL++Q   I++
Sbjct: 63  KSPIFHYLKKNKKYDSLLTQTTMQEIDTLKYQLTPIKK 100


>gi|332667493|ref|YP_004450281.1| signal transduction histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336307|gb|AEE53408.1| signal transduction histidine kinase [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 609

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 50/94 (53%), Gaps = 4/94 (4%)

Query: 5   SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALI----VF 60
           S E+++ L+ E+ H ++  ++ I ++L  +  D  ++  R  +  +++RI A+     V 
Sbjct: 401 SLEQQIMLQGEIHHRVKNNLQVIISLLELQKEDIKDENTRNGLEAMSSRIYAIAAVHDVL 460

Query: 61  REGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
            +G++  + D L   +K  S L QA+ +E  T Q
Sbjct: 461 YQGQEGQLVDFLNYTKKLCSHLQQAMAREDSTFQ 494


>gi|149186824|ref|ZP_01865134.1| putative signal transduction histidine kinase with GAF domain
          [Erythrobacter sp. SD-21]
 gi|148829491|gb|EDL47932.1| putative signal transduction histidine kinase with GAF domain
          [Erythrobacter sp. SD-21]
          Length = 208

 Score = 40.1 bits (92), Expect = 0.092,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 4/89 (4%)

Query: 7  EKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKS 66
          E+E  L  EV H ++  +  IS+I++ K+R +P++  RT +  I  RI +L    E  + 
Sbjct: 11 EREQTLRREVDHRVKNSLASISSIITMKARRSPDEGTRTALEDIGLRIRSLASLHEQLQD 70

Query: 67 L----IFDLLRTNQKTNSSLTQAIIQEID 91
          +      DL+   ++  + L Q + Q +D
Sbjct: 71 VGAHQTVDLVVLFERVGTDLRQLLPQGVD 99


>gi|306841654|ref|ZP_07474343.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2]
 gi|306288267|gb|EFM59647.1| Peptidoglycan-binding domain 1 protein [Brucella sp. BO2]
          Length = 946

 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 261 YASRYGPSSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 318

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 319 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 355


>gi|294853408|ref|ZP_06794080.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
 gi|294819063|gb|EFG36063.1| peptidoglycan-binding protein [Brucella sp. NVSL 07-0026]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|265999048|ref|ZP_06111541.1| peptidoglycan binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|263092001|gb|EEZ16298.1| peptidoglycan binding domain-containing protein [Brucella
           melitensis bv. 2 str. 63/9]
 gi|326410976|gb|ADZ68040.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M28]
 gi|326554267|gb|ADZ88906.1| peptidoglycan-binding domain 1 protein [Brucella melitensis M5-90]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|265992772|ref|ZP_06105329.1| peptidoglycan binding domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
 gi|262763642|gb|EEZ09674.1| peptidoglycan binding domain-containing protein [Brucella
           melitensis bv. 3 str. Ether]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|261750518|ref|ZP_05994227.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
           513]
 gi|261740271|gb|EEY28197.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 5 str.
           513]
          Length = 942

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|261322945|ref|ZP_05962142.1| peptidoglycan binding domain-containing protein [Brucella neotomae
           5K33]
 gi|261298925|gb|EEY02422.1| peptidoglycan binding domain-containing protein [Brucella neotomae
           5K33]
          Length = 959

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|261217417|ref|ZP_05931698.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
 gi|261320291|ref|ZP_05959488.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
 gi|260922506|gb|EEX89074.1| peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
 gi|261292981|gb|EEX96477.1| peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|261216267|ref|ZP_05930548.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str.
           Tulya]
 gi|260917874|gb|EEX84735.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 3 str.
           Tulya]
          Length = 942

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|260756423|ref|ZP_05868771.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str.
           870]
 gi|260676531|gb|EEX63352.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 6 str.
           870]
          Length = 893

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|260567915|ref|ZP_05838384.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str.
           40]
 gi|261753776|ref|ZP_05997485.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
           686]
 gi|260154580|gb|EEW89661.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 4 str.
           40]
 gi|261743529|gb|EEY31455.1| peptidoglycan-binding domain 1 protein [Brucella suis bv. 3 str.
           686]
          Length = 942

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|260564886|ref|ZP_05835371.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
           str. 16M]
 gi|265990118|ref|ZP_06102675.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
           str. Rev.1]
 gi|260152529|gb|EEW87622.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
           str. 16M]
 gi|263000787|gb|EEZ13477.1| peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|256111259|ref|ZP_05452290.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 3
           str. Ether]
          Length = 949

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|256059001|ref|ZP_05449212.1| Peptidoglycan-binding domain 1 protein [Brucella neotomae 5K33]
          Length = 930

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|256043697|ref|ZP_05446621.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 949

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|256015586|ref|YP_003105595.1| putative peptidoglycan-binding protein [Brucella microti CCM 4915]
 gi|255998246|gb|ACU49933.1| putative peptidoglycan-binding protein [Brucella microti CCM 4915]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|254712597|ref|ZP_05174408.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M644/93/1]
 gi|254715669|ref|ZP_05177480.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M13/05/1]
          Length = 949

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|254710930|ref|ZP_05172741.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
           B2/94]
 gi|256029312|ref|ZP_05442926.1| Peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
           M292/94/1]
 gi|256157508|ref|ZP_05455426.1| Peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
 gi|256253515|ref|ZP_05459051.1| Peptidoglycan-binding domain 1 protein [Brucella ceti B1/94]
 gi|260167596|ref|ZP_05754407.1| putative peptidoglycan-binding protein [Brucella sp. F5/99]
          Length = 949

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|254700036|ref|ZP_05161864.1| localization factor podJL [Brucella suis bv. 5 str. 513]
          Length = 913

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|254695847|ref|ZP_05157675.1| peptidoglycan binding domain 1:Sel1-like repeat-containing protein
           [Brucella abortus bv. 3 str. Tulya]
          Length = 913

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|254690844|ref|ZP_05154098.1| Sel1-like repeat [Brucella abortus bv. 6 str. 870]
          Length = 864

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|225686585|ref|YP_002734557.1| peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC
           23457]
 gi|225642690|gb|ACO02603.1| Peptidoglycan-binding domain 1 protein [Brucella melitensis ATCC
           23457]
          Length = 949

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|225629289|ref|ZP_03787322.1| peptidoglycan-binding protein [Brucella ceti str. Cudo]
 gi|261220645|ref|ZP_05934926.1| peptidoglycan binding domain-containing protein [Brucella ceti
           B1/94]
 gi|261318512|ref|ZP_05957709.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
           B2/94]
 gi|261757018|ref|ZP_06000727.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99]
 gi|265986312|ref|ZP_06098869.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
           M292/94/1]
 gi|265996006|ref|ZP_06108563.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
 gi|225615785|gb|EEH12834.1| peptidoglycan-binding protein [Brucella ceti str. Cudo]
 gi|260919229|gb|EEX85882.1| peptidoglycan binding domain-containing protein [Brucella ceti
           B1/94]
 gi|261297735|gb|EEY01232.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
           B2/94]
 gi|261737002|gb|EEY24998.1| peptidoglycan-binding domain 1 protein [Brucella sp. F5/99]
 gi|262550303|gb|EEZ06464.1| peptidoglycan-binding domain 1 protein [Brucella ceti M490/95/1]
 gi|264658509|gb|EEZ28770.1| peptidoglycan-binding domain 1 protein [Brucella pinnipedialis
           M292/94/1]
          Length = 978

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|189022598|ref|YP_001932339.1| Sel1-like repeat [Brucella abortus S19]
 gi|237816900|ref|ZP_04595892.1| Localization factor podJL [Brucella abortus str. 2308 A]
 gi|260544579|ref|ZP_05820400.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038]
 gi|260759855|ref|ZP_05872203.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str.
           292]
 gi|260763094|ref|ZP_05875426.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260882246|ref|ZP_05893860.1| peptidoglycan binding domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297249385|ref|ZP_06933086.1| TPR repeat-containing protein [Brucella abortus bv. 5 str. B3196]
 gi|189021172|gb|ACD73893.1| Sel1-like repeat [Brucella abortus S19]
 gi|237787713|gb|EEP61929.1| Localization factor podJL [Brucella abortus str. 2308 A]
 gi|260097850|gb|EEW81724.1| peptidoglycan-binding domain 1 protein [Brucella abortus NCTC 8038]
 gi|260670173|gb|EEX57113.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 4 str.
           292]
 gi|260673515|gb|EEX60336.1| peptidoglycan-binding domain 1 protein [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260871774|gb|EEX78843.1| peptidoglycan binding domain-containing protein [Brucella abortus
           bv. 9 str. C68]
 gi|297173254|gb|EFH32618.1| TPR repeat-containing protein [Brucella abortus bv. 5 str. B3196]
          Length = 942

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|163844942|ref|YP_001622597.1| hypothetical protein BSUIS_B0814 [Brucella suis ATCC 23445]
 gi|163675665|gb|ABY39775.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
          Length = 913

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|161620880|ref|YP_001594766.1| localization factor podJL [Brucella canis ATCC 23365]
 gi|254703156|ref|ZP_05164984.1| localization factor podJL [Brucella suis bv. 3 str. 686]
 gi|161337691|gb|ABX63995.1| Localization factor podJL [Brucella canis ATCC 23365]
          Length = 913

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|23500552|ref|NP_699992.1| peptidoglycan-binding protein [Brucella suis 1330]
 gi|23464187|gb|AAN33997.1| peptidoglycan-binding protein, putative [Brucella suis 1330]
          Length = 913

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|62317347|ref|YP_223200.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941]
 gi|83269325|ref|YP_418616.1| Sel1-like repeat-containing protein [Brucella melitensis biovar
           Abortus 2308]
 gi|254698625|ref|ZP_05160453.1| Sel1-like repeat [Brucella abortus bv. 2 str. 86/8/59]
 gi|254732072|ref|ZP_05190650.1| Sel1-like repeat [Brucella abortus bv. 4 str. 292]
 gi|256256027|ref|ZP_05461563.1| Sel1-like repeat [Brucella abortus bv. 9 str. C68]
 gi|62197540|gb|AAX75839.1| peptidoglycan-binding protein [Brucella abortus bv. 1 str. 9-941]
 gi|82939599|emb|CAJ12579.1| Putative peptidoglycan binding domain 1:Sel1-like repeat [Brucella
           melitensis biovar Abortus 2308]
          Length = 913

 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 358


>gi|148558507|ref|YP_001257764.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840]
 gi|148369792|gb|ABQ62664.1| putative peptidoglycan-binding protein [Brucella ovis ATCC 25840]
          Length = 978

 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASPADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 387


>gi|261313118|ref|ZP_05952315.1| peptidoglycan-binding protein [Brucella pinnipedialis M163/99/10]
 gi|261302144|gb|EEY05641.1| peptidoglycan-binding protein [Brucella pinnipedialis M163/99/10]
          Length = 580

 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 125 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--AEIRPRLDSIERSLHSNREIVL 182

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K+ +++ Q +  ++  L+
Sbjct: 183 DAAREATESVVARMLQHGPKSETAIAQQLAADMKALE 219


>gi|306837317|ref|ZP_07470199.1| Peptidoglycan-binding domain 1 protein [Brucella sp. NF 2653]
 gi|306407594|gb|EFM63791.1| Peptidoglycan-binding domain 1 protein [Brucella sp. NF 2653]
          Length = 979

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K  +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKGETAIAQQLAADMKALE 387


>gi|265985084|ref|ZP_06097819.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
 gi|264663676|gb|EEZ33937.1| peptidoglycan-binding domain 1 protein [Brucella sp. 83/13]
          Length = 979

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 293 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 350

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K  +++ Q +  ++  L+
Sbjct: 351 DAAREATESVVARMLQHGPKGETAIAQQLAADMKALE 387


>gi|254720079|ref|ZP_05181890.1| putative peptidoglycan-binding protein [Brucella sp. 83/13]
          Length = 950

 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 3   YDSREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYII-----TARIIAL 57
           Y SR      +SE +HN+  QI  I+  L++ SR+    EIR ++  I     + R I L
Sbjct: 264 YASRYGASSADSEAIHNLEQQIASIAQHLAQPSREL--SEIRPRLDSIERSLHSNREIVL 321

Query: 58  IVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQ 94
              RE  +S++  +L+   K  +++ Q +  ++  L+
Sbjct: 322 DAAREATESVVARMLQHGPKGETAIAQQLAADMKALE 358


>gi|222086837|ref|YP_002545371.1| hypothetical protein Arad_3509 [Agrobacterium radiobacter K84]
 gi|221724285|gb|ACM27441.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 388

 Score = 37.7 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)

Query: 9   EVFLESEVVH---NIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEK 65
           E  +E ++ H    +R +   +S  LSK      +Q +R +I +I A ++AL   +EG++
Sbjct: 297 ERTVEDDIAHLTEEVRNRAAALSDRLSKSRSPAHDQAMREEIAVIGANMVALTARQEGDQ 356

Query: 66  SLIFDLL 72
           S IFDLL
Sbjct: 357 SPIFDLL 363


>gi|294786774|ref|ZP_06752028.1| sensor histidine kinase [Parascardovia denticolens F0305]
 gi|315226397|ref|ZP_07868185.1| sensor histidine kinase [Parascardovia denticolens DSM 10105]
 gi|294485607|gb|EFG33241.1| sensor histidine kinase [Parascardovia denticolens F0305]
 gi|315120529|gb|EFT83661.1| sensor histidine kinase [Parascardovia denticolens DSM 10105]
          Length = 502

 Score = 35.4 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 14  SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREG 63
           +E+ H ++  ++ +S++L  ++R T NQE+R ++     RI  + V  EG
Sbjct: 298 AEIHHRVKNNLQAVSSLLRLQARRTSNQEVRKELQEAMRRIETIAVVHEG 347


>gi|50551433|ref|XP_503190.1| YALI0D23419p [Yarrowia lipolytica]
 gi|49649058|emb|CAG81390.1| YALI0D23419p [Yarrowia lipolytica]
          Length = 757

 Score = 35.0 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 17  VHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKSLIFDLLRTNQ 76
           V ++ L ++ I  ++SK ++DTP  E   ++ I TA+    +V  +   S+ F    T+ 
Sbjct: 84  VTSLALSVKAIEGLISKANQDTPKAEGWAELGINTAQQTVTLV--QLFTSISFHFTSTSI 141

Query: 77  KTNSSLTQAIIQEIDTL 93
            T SS TQ +I  ID++
Sbjct: 142 HTVSSSTQDVIHVIDSV 158


>gi|149185692|ref|ZP_01864008.1| putative signal transduction histidine kinase with GAF domain
           [Erythrobacter sp. SD-21]
 gi|148830912|gb|EDL49347.1| putative signal transduction histidine kinase with GAF domain
           [Erythrobacter sp. SD-21]
          Length = 362

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 30/51 (58%)

Query: 7   EKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIAL 57
           ++E  L  EV H ++  +  I A+LS K+R T N+ +R ++   + RI +L
Sbjct: 164 QEERILRREVDHRVKNSLASIGALLSMKARKTSNEALRLELDDASTRIRSL 214


>gi|85373663|ref|YP_457725.1| signal transduction histidine kinase [Erythrobacter litoralis
           HTCC2594]
 gi|84786746|gb|ABC62928.1| putative signal transduction histidine kinase with GAF domain
           [Erythrobacter litoralis HTCC2594]
          Length = 365

 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 31/53 (58%)

Query: 5   SREKEVFLESEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIAL 57
           S E+E  L  EV H ++  +  I A+LS K+R T N+ ++ ++   + RI +L
Sbjct: 162 SLEEERVLRREVDHRVKNSLASIGAMLSMKARRTSNETLKMELDDASTRIRSL 214


>gi|294790723|ref|ZP_06755881.1| sensor histidine kinase [Scardovia inopinata F0304]
 gi|294458620|gb|EFG26973.1| sensor histidine kinase [Scardovia inopinata F0304]
          Length = 500

 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 30/50 (60%)

Query: 14  SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREG 63
           +EV H I+  ++ +S++L  ++R T N+E+R ++     R+  + V  EG
Sbjct: 295 AEVHHRIKNNLQAVSSLLRLQARRTKNEEVRKELQEAQRRVETIAVVHEG 344


>gi|309801261|ref|ZP_07695390.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|308222150|gb|EFO78433.1| ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 494

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 6   REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
           REKE+  +    SE+ H ++  ++ +SA+L  ++R T ++E++ ++     R+  + +  
Sbjct: 279 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 338

Query: 62  EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIE 101
           EG      +++  ++  +S L  A+  ++ T++ Q  +I+
Sbjct: 339 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQHINID 376


>gi|283455794|ref|YP_003360358.1| histidine kinase-like protein [Bifidobacterium dentium Bd1]
 gi|283102428|gb|ADB09534.1| Histidine kinase-like protein [Bifidobacterium dentium Bd1]
          Length = 508

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 6   REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
           REKE+  +    SE+ H ++  ++ +SA+L  ++R T ++E++ ++     R+  + +  
Sbjct: 293 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 352

Query: 62  EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIE 101
           EG      +++  ++  +S L  A+  ++ T++ Q  +I+
Sbjct: 353 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQHINID 390


>gi|171743228|ref|ZP_02919035.1| hypothetical protein BIFDEN_02356 [Bifidobacterium dentium ATCC
           27678]
 gi|306823071|ref|ZP_07456447.1| histidine kinase family protein [Bifidobacterium dentium ATCC
           27679]
 gi|171278842|gb|EDT46503.1| hypothetical protein BIFDEN_02356 [Bifidobacterium dentium ATCC
           27678]
 gi|304553703|gb|EFM41614.1| histidine kinase family protein [Bifidobacterium dentium ATCC
           27679]
          Length = 498

 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 55/100 (55%), Gaps = 6/100 (6%)

Query: 6   REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
           REKE+  +    SE+ H ++  ++ +SA+L  ++R T ++E++ ++     R+  + +  
Sbjct: 283 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 342

Query: 62  EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSIE 101
           EG      +++  ++  +S L  A+  ++ T++ Q  +I+
Sbjct: 343 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQHINID 380


>gi|289178777|gb|ADC86023.1| Sensory Transduction Protein Kinase [Bifidobacterium animalis
           subsp. lactis BB-12]
          Length = 501

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 11/81 (13%)

Query: 6   REKEVFLE------SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIV 59
           R +EV L+      SE+ H ++  ++ +SA+L  ++R T +QE++ ++     R+  + +
Sbjct: 286 RRREVELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSQEVKKELQEAMRRVQTIAM 345

Query: 60  FREG-----EKSLIFDLLRTN 75
             EG     ++++ FD + +N
Sbjct: 346 VHEGLSQTADENVDFDKVISN 366


>gi|219683520|ref|YP_002469903.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|219621170|gb|ACL29327.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis AD011]
          Length = 509

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 11/81 (13%)

Query: 6   REKEVFLE------SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIV 59
           R +EV L+      SE+ H ++  ++ +SA+L  ++R T +QE++ ++     R+  + +
Sbjct: 294 RRREVELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSQEVKKELQEAMRRVQTIAM 353

Query: 60  FREG-----EKSLIFDLLRTN 75
             EG     ++++ FD + +N
Sbjct: 354 VHEGLSQTADENVDFDKVISN 374


>gi|183601466|ref|ZP_02962836.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|241191034|ref|YP_002968428.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241196440|ref|YP_002969995.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183219072|gb|EDT89713.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|240249426|gb|ACS46366.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250994|gb|ACS47933.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295794023|gb|ADG33558.1| histidine kinase-like protein [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 492

 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 11/81 (13%)

Query: 6   REKEVFLE------SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIV 59
           R +EV L+      SE+ H ++  ++ +SA+L  ++R T +QE++ ++     R+  + +
Sbjct: 277 RRREVELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSQEVKKELQEAMRRVQTIAM 336

Query: 60  FREG-----EKSLIFDLLRTN 75
             EG     ++++ FD + +N
Sbjct: 337 VHEGLSQTADENVDFDKVISN 357


>gi|225351853|ref|ZP_03742876.1| hypothetical protein BIFPSEUDO_03455 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225157100|gb|EEG70439.1| hypothetical protein BIFPSEUDO_03455 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 501

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 6   REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
           REKE+  +    SE+ H ++  ++ +SA+L  ++R T ++E++ ++     R+  + +  
Sbjct: 285 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 344

Query: 62  EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQ 96
           EG      +++  ++  +S L  A+  ++ T++ Q
Sbjct: 345 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQ 377


>gi|212716146|ref|ZP_03324274.1| hypothetical protein BIFCAT_01061 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661513|gb|EEB22088.1| hypothetical protein BIFCAT_01061 [Bifidobacterium catenulatum DSM
           16992]
          Length = 498

 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 52/95 (54%), Gaps = 6/95 (6%)

Query: 6   REKEVFLE----SEVVHNIRLQIEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFR 61
           REKE+  +    SE+ H ++  ++ +SA+L  ++R T ++E++ ++     R+  + +  
Sbjct: 285 REKELQTKDATISEIHHRVKNNLQAVSALLRLQARKTKSEEVKKELKEAQRRVQTIAMVH 344

Query: 62  EGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQHQ 96
           EG      +++  ++  +S L  A+  ++ T++ Q
Sbjct: 345 EGLSQTADEIVDYDKVISSLLKMAV--DLATMRDQ 377


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.319    0.133    0.345 

Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 843,103,538
Number of Sequences: 14124377
Number of extensions: 28077125
Number of successful extensions: 77518
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 43
Number of HSP's that attempted gapping in prelim test: 77510
Number of HSP's gapped (non-prelim): 51
length of query: 104
length of database: 4,842,793,630
effective HSP length: 73
effective length of query: 31
effective length of database: 3,811,714,109
effective search space: 118163137379
effective search space used: 118163137379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.8 bits)