RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
(104 letters)
>gnl|CDD|182849 PRK10933, PRK10933, trehalose-6-phosphate hydrolase; Provisional.
Length = 551
Score = 27.4 bits (61), Expect = 0.95
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 3/20 (15%)
Query: 25 EEISAILSKKSRD---TPNQ 41
+E+ AIL+ KSRD TP Q
Sbjct: 399 DELLAILASKSRDNSRTPMQ 418
>gnl|CDD|181807 PRK09374, rplB, 50S ribosomal protein L2; Validated.
Length = 276
Score = 25.4 bits (57), Expect = 2.9
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 51 TARIIALIVFREGEKSLI 68
+ARI AL+ + +GEK I
Sbjct: 88 SARI-ALLHYADGEKRYI 104
>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
The Lys-sensitive enzyme of Bacillus subtilis resembles
the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. The
protein slr0657 from Synechocystis PCC6803 is extended
by a duplication of the C-terminal region corresponding
to the beta chain. Incorporation of a second copy of the
C-terminal domain may be quite common in this subgroup
of aspartokinases.
Length = 401
Score = 25.4 bits (56), Expect = 3.3
Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)
Query: 25 EEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKSLIFDLLRTNQKTNSSLTQ 84
+ I ++ + RD E+ + +++ + + + G K++ D T+ +
Sbjct: 55 KAIRDAITPRERD----ELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110
Query: 85 AIIQEIDT 92
A I I T
Sbjct: 111 AKIDIIAT 118
>gnl|CDD|150842 pfam10231, DUF2315, Uncharacterized conserved protein (DUF2315).
This is a family of small conserved proteins found from
worms to humans. The function is not known.
Length = 127
Score = 24.8 bits (54), Expect = 5.6
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 5 SREKEVFLESEVVHNIRLQIEEISA 29
S+EKE F+ E + + EE+SA
Sbjct: 55 SKEKEAFIRKEQLRKESGRTEEVSA 79
>gnl|CDD|162843 TIGR02403, trehalose_treC, alpha,alpha-phosphotrehalase. Trehalose
is a glucose disaccharide that serves in many biological
systems as a compatible solute for protection against
hyperosmotic and thermal stress. This family describes
trehalose-6-phosphate hydrolase, product of the treC (or
treA) gene, which is often found together with a
trehalose uptake transporter and a trehalose operon
repressor.
Length = 543
Score = 24.6 bits (54), Expect = 6.5
Identities = 12/20 (60%), Positives = 13/20 (65%), Gaps = 3/20 (15%)
Query: 25 EEISAILSKKSRD---TPNQ 41
EE AIL +KSRD TP Q
Sbjct: 393 EEALAILKQKSRDNSRTPMQ 412
>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 24.2 bits (53), Expect = 7.2
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 25 EEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGE 64
+ I L KK P+ EIR ++ I + +FR+
Sbjct: 433 KRIFDKLLKKEGGEPSYEIRRELNDIMDK--NFGIFRDES 470
>gnl|CDD|162706 TIGR02104, pulA_typeI, pullulanase, type I. Pullulan is an
unusual, industrially important polysaccharide in which
short alpha-1,4 chains (maltotriose) are connected in
alpha-1,6 linkages. Enzymes that cleave alpha-1,6
linkages in pullulan and release maltotriose are called
pullulanases although pullulan itself may not be the
natural substrate. This family consists of pullulanases
related to the subfamilies described in TIGR02102 and
TIGR02103 but having a different domain architecture
with shorter sequences. Members are called type I
pullulanases.
Length = 605
Score = 24.2 bits (53), Expect = 7.8
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 8/36 (22%)
Query: 63 GEKSLIFDLLRTN-----QKTNSSL---TQAIIQEI 90
G++ + DL RTN + L AII E+
Sbjct: 98 GKRGAVIDLERTNPEGWEKDHRPRLENPEDAIIYEL 133
>gnl|CDD|178730 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 24.1 bits (52), Expect = 7.9
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 2 FYDSREKEVFLESEVVHNIRLQIE 25
FYD E+EV LE + ++R Q++
Sbjct: 982 FYDMGEREVLLEE--IQDLRSQLQ 1003
>gnl|CDD|179102 PRK00733, hppA, membrane-bound proton-translocating
pyrophosphatase; Validated.
Length = 666
Score = 23.9 bits (53), Expect = 8.6
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 15 EVVHNIRLQIEEISAILSKKSR 36
+V +R Q EI I+ ++
Sbjct: 514 AMVEEVRRQFREIPGIMEGTAK 535
>gnl|CDD|162131 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein.
Length = 1394
Score = 23.9 bits (52), Expect = 9.0
Identities = 8/30 (26%), Positives = 15/30 (50%)
Query: 9 EVFLESEVVHNIRLQIEEISAILSKKSRDT 38
EV+ S ++ +++ + A LSK D
Sbjct: 1035 EVWRNSSEYQAVKNELDRLEAELSKAEDDN 1064
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.319 0.133 0.345
Gapped
Lambda K H
0.267 0.0713 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,544,348
Number of extensions: 84777
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 33
Length of query: 104
Length of database: 5,994,473
Length adjustment: 71
Effective length of query: 33
Effective length of database: 4,460,305
Effective search space: 147190065
Effective search space used: 147190065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.1 bits)