RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
         (104 letters)



>3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral
           defense, cytokine, secreted; 2.80A {Homo sapiens} (A:)
          Length = 196

 Score = 28.3 bits (63), Expect = 0.35
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 53  RIIALIVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQH 95
           R +AL    E E +L   +L     T+ +L   + Q + TL H
Sbjct: 90  RPVAL----EAELALTLKVLEATADTDPALGDVLDQPLHTLHH 128


>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein
           turnover/protein turnover complex; 1.97A {Saccharomyces
           cerevisiae} PDB: 2dym_A (A:1-13,A:135-297)
          Length = 176

 Score = 25.2 bits (55), Expect = 3.1
 Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 8/69 (11%)

Query: 31  LSKKSRDTPNQEIRTKIYIITARIIALIVFR----EGEKSLIFDLLRT----NQKTNSSL 82
           +S K   +  + I   I          I        G    + D+        +  N + 
Sbjct: 70  ISNKISSSRPRHIPLIIQTSRTSGTFRISQPTISMTGVNPTLKDIEGDILDVKEGINGND 129

Query: 83  TQAIIQEID 91
              I Q I+
Sbjct: 130 VMVICQGIE 138


>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (A:550-614)
          Length = 65

 Score = 23.9 bits (51), Expect = 7.3
 Identities = 3/7 (42%), Positives = 6/7 (85%)

Query: 19 NIRLQIE 25
          N+ ++IE
Sbjct: 1  NVEVKIE 7


>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA
          synthetase class II, ligase; 3.23A {Methanococcus
          maripaludis S2} (B:550-611)
          Length = 62

 Score = 23.6 bits (50), Expect = 9.0
 Identities = 3/7 (42%), Positives = 6/7 (85%)

Query: 19 NIRLQIE 25
          N+ ++IE
Sbjct: 1  NVEVKIE 7


>1giy_D 50S ribosomal protein L2; ribosome assembly, protein
          synthesis, LIFE; 5.50A {Thermus thermophilus} (D:1-56)
          Length = 56

 Score = 23.8 bits (52), Expect = 9.1
 Identities = 8/14 (57%), Positives = 10/14 (71%)

Query: 55 IALIVFREGEKSLI 68
          IALI + +GEK  I
Sbjct: 31 IALINYADGEKRYI 44


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.319    0.133    0.345 

Gapped
Lambda     K      H
   0.267   0.0621    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 671,280
Number of extensions: 24395
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 6
Length of query: 104
Length of database: 4,956,049
Length adjustment: 61
Effective length of query: 43
Effective length of database: 2,893,944
Effective search space: 124439592
Effective search space used: 124439592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)