RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
         (104 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 40/121 (33%)

Query: 11  FLESEVVHNI--RLQIEEISAILSKKSRDTPNQEIRTKIYIITARII-----------AL 57
           +LE   +H +  +L  E  + ++  K        I+   YI TARI+           AL
Sbjct: 95  YLEGNDIHALAAKLLQENDTTLVKTKEL------IKN--YI-TARIMAKRPFDKKSNSAL 145

Query: 58  IVFR---EGEKSLI------------FDLLRTNQKTNSSLTQAIIQEI-DTLQHQCKSIE 101
             FR   EG   L+            F+ LR   +T   L   +I+   +TL    ++  
Sbjct: 146 --FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203

Query: 102 R 102
            
Sbjct: 204 D 204



 Score = 31.1 bits (70), Expect = 0.064
 Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 22/76 (28%)

Query: 38  TPNQEIRTKIY--------IITARIIALIV-----FREGEK---SLIFDL-LRTNQKT-N 79
           TP  E+R+ +         ++TA  IA        F    +   +++F + +R  +   N
Sbjct: 259 TPG-ELRSYLKGATGHSQGLVTAVAIA-ETDSWESFFVSVRKAITVLFFIGVRCYEAYPN 316

Query: 80  SSLTQAIIQEIDTLQH 95
           +SL  +I++  D+L++
Sbjct: 317 TSLPPSILE--DSLEN 330


>3hhc_A Interleukin-28B; interferon, IL-22, antiviral, antiviral defense,
           cytokine, secreted; 2.80A {Homo sapiens}
          Length = 196

 Score = 28.7 bits (64), Expect = 0.33
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 53  RIIALIVFREGEKSLIFDLLRTNQKTNSSLTQAIIQEIDTLQH 95
           R +AL    E E +L   +L     T+ +L   + Q + TL H
Sbjct: 90  RPVAL----EAELALTLKVLEATADTDPALGDVLDQPLHTLHH 128


>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
           c.117.1.1
          Length = 476

 Score = 26.3 bits (57), Expect = 1.7
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 68  IFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSI 100
           I + L+ +++    L Q  ++ I  L    K+ 
Sbjct: 12  IEECLKLSEEEREKLPQLSLETIKRLDPHVKAF 44


>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET:
           LYS; 2.54A {Synechocystis}
          Length = 600

 Score = 26.0 bits (57), Expect = 1.9
 Identities = 9/69 (13%), Positives = 28/69 (40%), Gaps = 4/69 (5%)

Query: 24  IEEISAILSKKSRDTPNQEIRTKIYIITARIIALIVFREGEKSLIFDLLRTNQKTNSSLT 83
            ++IS    ++  D     + +    ++  +++L +    + ++     +    T +  +
Sbjct: 54  AQQISPNPCRREMD----MLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109

Query: 84  QAIIQEIDT 92
           +A I EI  
Sbjct: 110 RARILEIRP 118


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.319    0.133    0.345 

Gapped
Lambda     K      H
   0.267   0.0604    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 781,612
Number of extensions: 30244
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 11
Length of query: 104
Length of database: 5,693,230
Length adjustment: 69
Effective length of query: 35
Effective length of database: 4,020,394
Effective search space: 140713790
Effective search space used: 140713790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)