RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780890|ref|YP_003065303.1| hypothetical protein CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62] (104 letters) >d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase subunit A {Thermotoga maritima [TaxId: 2336]} Length = 475 Score = 26.0 bits (56), Expect = 0.89 Identities = 7/33 (21%), Positives = 15/33 (45%) Query: 68 IFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSI 100 I + L+ +++ L Q ++ I L K+ Sbjct: 11 IEECLKLSEEEREKLPQLSLETIKRLDPHVKAF 43 >d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]} Length = 320 Score = 24.8 bits (53), Expect = 1.8 Identities = 8/32 (25%), Positives = 15/32 (46%) Query: 31 LSKKSRDTPNQEIRTKIYIITARIIALIVFRE 62 LS+ R Q K ++ ++IA+ F + Sbjct: 4 LSEGPRAFTYQVDGEKKSVLLRQVIAVTDFND 35 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.319 0.133 0.345 Gapped Lambda K H 0.267 0.0477 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 341,378 Number of extensions: 13236 Number of successful extensions: 26 Number of sequences better than 10.0: 1 Number of HSP's gapped: 26 Number of HSP's successfully gapped: 2 Length of query: 104 Length of database: 2,407,596 Length adjustment: 65 Effective length of query: 39 Effective length of database: 1,515,146 Effective search space: 59090694 Effective search space used: 59090694 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 47 (22.5 bits)