RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780890|ref|YP_003065303.1| hypothetical protein
CLIBASIA_03935 [Candidatus Liberibacter asiaticus str. psy62]
         (104 letters)



>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
           subunit A {Thermotoga maritima [TaxId: 2336]}
          Length = 475

 Score = 26.0 bits (56), Expect = 0.89
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 68  IFDLLRTNQKTNSSLTQAIIQEIDTLQHQCKSI 100
           I + L+ +++    L Q  ++ I  L    K+ 
Sbjct: 11  IEECLKLSEEEREKLPQLSLETIKRLDPHVKAF 43


>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella
          enterica [TaxId: 28901]}
          Length = 320

 Score = 24.8 bits (53), Expect = 1.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 31 LSKKSRDTPNQEIRTKIYIITARIIALIVFRE 62
          LS+  R    Q    K  ++  ++IA+  F +
Sbjct: 4  LSEGPRAFTYQVDGEKKSVLLRQVIAVTDFND 35


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.345 

Gapped
Lambda     K      H
   0.267   0.0477    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 341,378
Number of extensions: 13236
Number of successful extensions: 26
Number of sequences better than 10.0: 1
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 104
Length of database: 2,407,596
Length adjustment: 65
Effective length of query: 39
Effective length of database: 1,515,146
Effective search space: 59090694
Effective search space used: 59090694
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.5 bits)