HHsearch alignment for GI: 254780891 and conserved domain: COG0643
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].
Probab=99.70 E-value=9.3e-16 Score=119.99 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=107.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-CCCCCCCCCCCCCCCCCHHHH----HHHHHHHHHHHHHH------------HHHCC
Q ss_conf 23200000000013444443220-122332110000001000123----44456766468765------------32001
Q gi|254780891|r 73 YTGSVDSLIGLGDIEQVIEDFIA-VDKRVQVSWTGEKIDLSRERA----KILLNLFMVAHASL------------PRGGK 135 (215)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~----qvl~NLi~NA~~a~------------~~gg~ 135 (215)
T Consensus 386 ~~RMvP~~~vf~RfpR~VRdla~~lgK~V~L~ieG~~telDksIlE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~ 465 (716)
T COG0643 386 KIRMVPFEQVFSRFPRMVRDLARKLGKQVELVIEGEDTELDKSILERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGT 465 (716)
T ss_pred HHHCEEHHHHHHHCCHHHHHHHHHHCCEEEEEEECCCEEEHHHHHHHHCCCHHHHHHCCHHCCCCCHHHHHHCCCCCCCE
T ss_conf 97000399987444099999999869916999964871342989988646699888500110589889998759898636
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCH-----------------------HHHHHHHCCCCCCC-----CCCCCHHHHHHH
Q ss_conf 11112355772047999878984402-----------------------45887405454578-----998720499999
Q gi|254780891|r 136 VTISVQDSKNENIFSLKINGNLARFP-----------------------EKFTQIVDGNVEST-----IDSHDIQFYYVI 187 (215)
Q Consensus 136 I~i~~~~~~~~~~i~V~D~G~Gi~~~-----------------------e~~~~~~~~~~~~~-----~~g~GlGl~~~~ 187 (215)
T Consensus 466 I~L~A~~~gn~ivIev~DDG~Gid~ekI~~KAiErGli~~~~a~~lSd~Ei~~LIF~PGFSTa~~VtdvSGRGVGMDVVk 545 (716)
T COG0643 466 ITLSAYHEGNNIVIEVSDDGAGIDREKIREKAIERGLITEEEAETLSDEEILNLIFAPGFSTAEQVTDVSGRGVGMDVVK 545 (716)
T ss_pred EEEEEECCCCEEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHCCCCHHHHHHHHHCCCCCCCHHHHCCCCCCCCHHHHH
T ss_conf 99999837986999995689987999999999982998867752079999998873699873411101657765789999
Q ss_pred HHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 999970987999987799269999941
Q gi|254780891|r 188 LLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 188 ~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
T Consensus 546 ~~I~~LgG~I~V~S~~G~GT~Fti~LP 572 (716)
T COG0643 546 TNIEQLGGSISVSSEPGKGTTFTIRLP 572 (716)
T ss_pred HHHHHCCCEEEEEECCCCCEEEEEECC
T ss_conf 999973998999962789769999668