HHsearch alignment for GI: 254780891 and conserved domain: COG1389
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair].
Probab=98.18 E-value=1.6e-05 Score=54.89 Aligned_cols=102 Identities=12% Similarity=0.128 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCC-CCCEEEEEEECCCCCC---CHHHHHHHHCCC-C-C-CCCC-CCC
Q ss_conf 00123444567664687653200---111112355-7720479998789844---024588740545-4-5-7899-872
Q gi|254780891|r 112 SRERAKILLNLFMVAHASLPRGG---KVTISVQDS-KNENIFSLKINGNLAR---FPEKFTQIVDGN-V-E-STID-SHD 180 (215)
Q Consensus 112 ~~~~~qvl~NLi~NA~~a~~~gg---~I~i~~~~~-~~~~~i~V~D~G~Gi~---~~e~~~~~~~~~-~-~-~~~~-g~G 180 (215)
T Consensus 34 ~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~QsRGqqG 113 (538)
T COG1389 34 IRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQSRGQQG 113 (538)
T ss_pred HHHHHHHHHHHHHCCHHHHHHCCCCCCEEEEEEECCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCC
T ss_conf 06899999999853165687608887659999854775589999348999985675789988860232323443255324
Q ss_pred HHHHHHHHHHHHCCC-EEEEEEECCC-CEEEEEEE
Q ss_conf 049999999997098-7999987799-26999994
Q gi|254780891|r 181 IQFYYVILLAHENKI-RLLPEIIDDH-NVVLSALL 213 (215)
Q Consensus 181 lGl~~~~~i~~~~gG-~i~v~~~~~~-g~~f~~~l 213 (215)
T Consensus 114 iGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l 148 (538)
T COG1389 114 IGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYEL 148 (538)
T ss_pred CCHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEE
T ss_conf 24789999987517986699953788862489999