HHsearch alignment for GI: 254780891 and conserved domain: COG3275
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms].
Probab=98.85 E-value=1.9e-07 Score=67.14 Aligned_cols=182 Identities=18% Similarity=0.147 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHCCC-------CHH----HHH----HHHH----HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99774545422799999999--99961443-------014----789----8889----999999986311001122320
Q gi|254780891|r 18 LCSRICHDIISPIGAIHNSL--ELLDEVGI-------EDE----VMQ----LIRL----SSMSAIIRLKFMRLAFGYTGS 76 (215)
Q Consensus 18 las~IaHdlrtPL~~I~~~~--elL~~~~~-------~~~----~~~----~i~~----~~~~~~~l~~~~r~~~~~~~~ 76 (215)
T Consensus 335 la~Gia~l~SaQie~ge~e~q~~ll~~AEik~LqaQvnPHFLFNaLNTIsa~IR~npdkAreLil~LS~yfR~NL~~~-- 412 (557)
T COG3275 335 LAEGIAQLLSAQIEAGEAERQRELLKQAEIKALQAQVNPHFLFNALNTISAVIRRNPDKARELILYLSTYFRYNLENN-- 412 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC--
T ss_conf 999999999879997589999999889999999860370888888887788861782799999999999999873478--
Q ss_pred CCCCCCCCHHHHHHHHHHH-----CCCCCCCCCCCCCCCCCHHHH-HHHHHHHHHHHHHH----HHHCCCCCCCCCCCCC
Q ss_conf 0000000013444443220-----122332110000001000123-44456766468765----3200111112355772
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFIA-----VDKRVQVSWTGEKIDLSRERA-KILLNLFMVAHASL----PRGGKVTISVQDSKNE 146 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-qvl~NLi~NA~~a~----~~gg~I~i~~~~~~~~ 146 (215)
T Consensus 413 ~~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~ 492 (557)
T COG3275 413 TQEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPSFILQPLVENAIKHGISQLKDTGRVTISVEKEDAD 492 (557)
T ss_pred CCEEEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCHHHHHHHHHHHHHHCCCCHHCCCCEEEEEEEECCE
T ss_conf 71586559999999999989986448844799946877753368616677888888875364442088179999980883
Q ss_pred EEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCC---EEEEEEECCCCEEEEEEEE
Q ss_conf 0479998789844024588740545457899872049999999997098---7999987799269999941
Q gi|254780891|r 147 NIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKI---RLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 147 ~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG---~i~v~~~~~~g~~f~~~l~ 214 (215)
T Consensus 493 l~i~VeDng~li~p~-------------~~~g~giGL~nv~~RLk~lyG~~~gl~i~~~~q~gTri~f~lp 550 (557)
T COG3275 493 LRIEVEDNGGLIQPD-------------EEDGTGIGLANVHKRLKLLYGDDEGLHIESLEQAGTRIIFRLP 550 (557)
T ss_pred EEEEEECCCCCCCCC-------------CCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCEEEEEEC
T ss_conf 899994188776997-------------7889871788999999986482103137861677868999944