HHsearch alignment for GI: 254780891 and conserved domain: COG3850
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms].
Probab=99.29 E-value=9.2e-10 Score=81.91 Aligned_cols=181 Identities=11% Similarity=0.071 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-CCCCCCCCHHHHHHH
Q ss_conf 7745454227999999999----99614---430147898889999999986311001122320-000000001344444
Q gi|254780891|r 20 SRICHDIISPIGAIHNSLE----LLDEV---GIEDEVMQLIRLSSMSAIIRLKFMRLAFGYTGS-VDSLIGLGDIEQVIE 91 (215)
Q Consensus 20 s~IaHdlrtPL~~I~~~~e----lL~~~---~~~~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~-~~~~~~~~~~~~~~~ 91 (215)
T Consensus 374 atIAReLHDSiAQsLS~LkiQvt~L~~~~~~~~~e~s~~~i~~~r~~Ln~~Y~QLRELLtTFRltL~e~~L~~AL~~~~~ 453 (574)
T COG3850 374 ATIARELHDSIAQSLSFLKIQVTLLKTAIPEELPEKAREIIAQIRQGLNDAYRQLRELLTTFRLTLQEAELPPALEQMLA 453 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 99999877899999999999999998427865668799999999999999999999999987876056763899999999
Q ss_pred HHHHC-CCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHH
Q ss_conf 32201-223321100000010001----2344456766468765320011111235577204799987898440245887
Q gi|254780891|r 92 DFIAV-DKRVQVSWTGEKIDLSRE----RAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQ 166 (215)
Q Consensus 92 ~~~~~-~~~~~~~~~~~~~~~~~~----~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~ 166 (215)
T Consensus 454 ~f~~qtg~~~~l~~qlp~~~lpa~qqvHlLqIvREAlsNa~KHa~-As~i~V~~~~~~g~~~~~VeDnG~Gi~-~~---- 527 (574)
T COG3850 454 EFSNQTGITVTLDYQLPPRALPAHQQVHLLQIVREALSNAIKHAQ-ASEIKVTVSQNDGQVTLTVEDNGVGID-EA---- 527 (574)
T ss_pred HHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCEEEEEEEECCCCCC-CC----
T ss_conf 997346973887256898899878999999999999998998526-675899998659648999942883779-75----
Q ss_pred HHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 405454578998720499999999970987999987799269999941
Q gi|254780891|r 167 IVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 167 ~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
T Consensus 528 -------~e~~g-HyGL~IM~ERA~~L~~~L~i~~~~~gGT~V~ltf~ 567 (574)
T COG3850 528 -------AEPSG-HYGLNIMRERAQRLGGQLRIRRREGGGTEVSLTFP 567 (574)
T ss_pred -------CCCCC-CCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEC
T ss_conf -------67788-72369999999972575777645999817999956