HHsearch alignment for GI: 254780891 and conserved domain: COG4251
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms].
Probab=99.96 E-value=1.2e-27 Score=195.58 Aligned_cols=205 Identities=16% Similarity=0.162 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH---HHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9996768799999774545422799999999999614---43014789888---99999999863110011223200000
Q gi|254780891|r 7 FNLSSMDLVALLCSRICHDIISPIGAIHNSLELLDEV---GIEDEVMQLIR---LSSMSAIIRLKFMRLAFGYTGSVDSL 80 (215)
Q Consensus 7 ~~~~~~~laallas~IaHdlrtPL~~I~~~~elL~~~---~~~~~~~~~i~---~~~~~~~~l~~~~r~~~~~~~~~~~~ 80 (215)
T Consensus 517 lersn~el~~-f~yv~sHdlqePl~~I~~~a~lL~~~~~~~~d~~~~~~i~~~~~~~~~~~~lidd~l~~-s~l~~~~~~ 594 (750)
T COG4251 517 LERSNAELRA-FAYVASHDLQEPLRQISNYAQLLSERYSDALDEEAKEFITFISRLTSLMQQLIDDLLTY-SKLGLTEAP 594 (750)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCC
T ss_conf 7651589999-99986104667999999999766634366657588999999999999999999977423-120554577
Q ss_pred CCCCHHHHHHHHHH--------HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEEE
Q ss_conf 00001344444322--------012233211000000100012344456766468765320-011111235577204799
Q gi|254780891|r 81 IGLGDIEQVIEDFI--------AVDKRVQVSWTGEKIDLSRERAKILLNLFMVAHASLPRG-GKVTISVQDSKNENIFSL 151 (215)
Q Consensus 81 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~qvl~NLi~NA~~a~~~g-g~I~i~~~~~~~~~~i~V 151 (215)
T Consensus 595 l~~td~~~vv~~vl~~l~~ri~dtgaei~i~~lp~v~~d~~~l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV 674 (750)
T COG4251 595 LQPTDVQKVVDKVLLELSQRIADTGAEIRIAPLPVVAADATQLGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSV 674 (750)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCHHHHHHHHHHHHHHHEECCCCCCCCEEEEEECCCCCEEEEE
T ss_conf 77752678999999734531125652478625644640888999999998765521078889815885332587307985
Q ss_pred EECCCCCCCHHHHHHHHCCC----CCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf 98789844024588740545----4578998720499999999970987999987799269999941
Q gi|254780891|r 152 KINGNLARFPEKFTQIVDGN----VESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE 214 (215)
Q Consensus 152 ~D~G~Gi~~~e~~~~~~~~~----~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~ 214 (215)
T Consensus 675 ~dng~Gi~-~a~~~riF~iFqRl~s~~~y~gtG~GL~I~kkI~e~H~G~i~vEs~~gEgsTF~f~lp 740 (750)
T COG4251 675 RDNGIGID-PAYFERIFVIFQRLHSRDEYLGTGLGLAICKKIAERHQGRIWVESTPGEGSTFYFTLP 740 (750)
T ss_pred CCCCCCCC-HHHHHHHHHHHHHCCCHHHHCCCCCCHHHHHHHHHHHCCEEEEEECCCCCEEEEEEEE
T ss_conf 47877769-8999888998870375655147773389999999984845888604787416899840