HHsearch alignment for GI: 254780891 and conserved domain: COG5000
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms].
Probab=99.97 E-value=2.8e-29 Score=205.86 Aligned_cols=204 Identities=15% Similarity=0.123 Sum_probs=145.6
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC---CCC------HHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 9967687999--99774545422799999999999614---430------147898889999999986311001122320
Q gi|254780891|r 8 NLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV---GIE------DEVMQLIRLSSMSAIIRLKFMRLAFGYTGS 76 (215)
Q Consensus 8 ~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~---~~~------~~~~~~i~~~~~~~~~l~~~~r~~~~~~~~ 76 (215)
T Consensus 477 LV~AQRs~AW~dVArRIAHEIKNPLTPIQLSAERl~rk~gk~i~eDrevfd~~tdTIirQV~dI~rMVdeF~afARmP~p 556 (712)
T COG5000 477 LVIAQRSAAWGDVARRIAHEIKNPLTPIQLSAERLLRKLGKEIDEDREVFDRCTDTIIRQVEDIKRMVDEFRAFARMPAP 556 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 99999987899999999887249986220028999988374123489999999999999999999999999987148998
Q ss_pred CCCCCCCCHHHHHHHHHH------HCCCCCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHH-------HCCCCCCC
Q ss_conf 000000001344444322------0122332110000---0010001234445676646876532-------00111112
Q gi|254780891|r 77 VDSLIGLGDIEQVIEDFI------AVDKRVQVSWTGE---KIDLSRERAKILLNLFMVAHASLPR-------GGKVTISV 140 (215)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~~~qvl~NLi~NA~~a~~~-------gg~I~i~~ 140 (215)
T Consensus 557 ~~e~~---dL~~ll~e~~~L~e~~~~~i~f~~e~g~epl~~~~D~~~l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~ 633 (712)
T COG5000 557 KLEKS---DLRALLKEVSFLYEIGNDHIVFAAEFGGEPLIGMADATLLGQVFGNLLKNAAEAIEAVEAEERRTALIRVSL 633 (712)
T ss_pred CCCCC---HHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 77742---299999999999962687769975318986253248999999999998719987531013467764389998
Q ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEE-CCCCEEEEEEEEC
Q ss_conf 35577204799987898440245887405454578998720499999999970987999987-7992699999419
Q gi|254780891|r 141 QDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEII-DDHNVVLSALLEK 215 (215)
Q Consensus 141 ~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~-~~~g~~f~~~l~~ 215 (215)
T Consensus 634 ~~~~g~i~v~V~DNGkG~p-~e~r~r~~EPYvTtr~KGTGLGLAiVKkIvEeHGG~leL~da~d~~GA~i~i~fp~ 708 (712)
T COG5000 634 DDADGRIVVDVIDNGKGFP-RENRHRALEPYVTTREKGTGLGLAIVKKIVEEHGGRLELHNAPDFDGAMIRIKFPL 708 (712)
T ss_pred ECCCCEEEEEEECCCCCCC-HHHHHHHCCCCEECCCCCCCCCHHHHHHHHHHCCCEEEECCCCCCCCCEEEEECCC
T ss_conf 4479849999810898799-67864323671421656666239999999996388277247899997679998365