HHsearch alignment for GI: 254780891 and conserved domain: PRK03660

>PRK03660 anti-sigma F factor; Provisional.
Probab=99.12  E-value=4.5e-10  Score=83.89  Aligned_cols=92  Identities=9%  Similarity=-0.002  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHH
Q ss_conf             2344456766468765---3200111112355772047999878984402458874054545789--9872049999999
Q gi|254780891|r  115 RAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILL  189 (215)
Q Consensus       115 ~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i  189 (215)
T Consensus        40 i~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid---~~~~~~~P~~t~~~~~~~~GlGl~li~~L  116 (146)
T PRK03660         40 IKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIE---DVEEARQPLFTTKPELERSGMGFTFMESF  116 (146)
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC---CHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             999999999999986036799927999999809999999997378947---37664388776687667564058999983


Q ss_pred             HHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf             997098799998779926999994
Q gi|254780891|r  190 AHENKIRLLPEIIDDHNVVLSALL  213 (215)
Q Consensus       190 ~~~~gG~i~v~~~~~~g~~f~~~l  213 (215)
T Consensus       117 m----DeVei~s~~g~GTtV~m~k  136 (146)
T PRK03660        117 M----DEVEVESEPGKGTTIRMKK  136 (146)
T ss_pred             C----CEEEEEECCCCCEEEEEEE
T ss_conf             8----8699995599978999999