HHsearch alignment for GI: 254780891 and conserved domain: PRK03660
>PRK03660 anti-sigma F factor; Provisional.
Probab=99.12 E-value=4.5e-10 Score=83.89 Aligned_cols=92 Identities=9% Similarity=-0.002 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHH
Q ss_conf 2344456766468765---3200111112355772047999878984402458874054545789--9872049999999
Q gi|254780891|r 115 RAKILLNLFMVAHASL---PRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILL 189 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~---~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i 189 (215)
T Consensus 40 i~lAV~EA~tNaI~H~y~~~~~g~I~I~~~~~~~~l~I~V~D~G~Gid---~~~~~~~P~~t~~~~~~~~GlGl~li~~L 116 (146)
T PRK03660 40 IKTAVSEAVTNAIIHGYENNPDGIVYIEAEIEDEELEITVRDEGKGIE---DVEEARQPLFTTKPELERSGMGFTFMESF 116 (146)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCEEEEEEEECCCCCC---CHHHCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999999986036799927999999809999999997378947---37664388776687667564058999983
Q ss_pred HHHCCCEEEEEEECCCCEEEEEEE
Q ss_conf 997098799998779926999994
Q gi|254780891|r 190 AHENKIRLLPEIIDDHNVVLSALL 213 (215)
Q Consensus 190 ~~~~gG~i~v~~~~~~g~~f~~~l 213 (215)
T Consensus 117 m----DeVei~s~~g~GTtV~m~k 136 (146)
T PRK03660 117 M----DEVEVESEPGKGTTIRMKK 136 (146)
T ss_pred C----CEEEEEECCCCCEEEEEEE
T ss_conf 8----8699995599978999999