HHsearch alignment for GI: 254780891 and conserved domain: PRK10935
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional.
Probab=99.67 E-value=4.7e-15 Score=115.54 Aligned_cols=176 Identities=11% Similarity=0.058 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHH----CCCCHHHHHHHHHHHHH-------HHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 7745454227999999999----9961----44301478988899999-------9998631100112232000000000
Q gi|254780891|r 20 SRICHDIISPIGAIHNSLE----LLDE----VGIEDEVMQLIRLSSMS-------AIIRLKFMRLAFGYTGSVDSLIGLG 84 (215)
Q Consensus 20 s~IaHdlrtPL~~I~~~~e----lL~~----~~~~~~~~~~i~~~~~~-------~~~l~~~~r~~~~~~~~~~~~~~~~ 84 (215)
T Consensus 366 ~~IARELHDsLaQ~Ls~lkiq~~lL~~~l~~~~~~~~~~~~l~~i~~~l~~a~~qlReLl~~fRl~------l~~~~L~~ 439 (568)
T PRK10935 366 ATIARELHDSLAQVLSYLKIQLTLLKRSLPKSCDNAKAESIIADFDEGLSDAYRQLRELLTTFRLT------IQEANLGS 439 (568)
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCCCCHHH
T ss_conf 899998441266578999999999998742256538899999999999999999999999983226------77568799
Q ss_pred HHHHHHHHHHHC-CCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEEEEEECCCCC
Q ss_conf 134444432201-22332110000001000----123444567664687653200111112355-772047999878984
Q gi|254780891|r 85 DIEQVIEDFIAV-DKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDS-KNENIFSLKINGNLA 158 (215)
Q Consensus 85 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~-~~~~~i~V~D~G~Gi 158 (215)
T Consensus 440 AL~~~~~~~~~q~~~~i~l~~~l~~~~l~~~~~i~llrIvqEALtN~~KHA~-A~~V~V~~~~~~~~~v~l~V~DnG~Gf 518 (568)
T PRK10935 440 ALEEMLDQLRNQTSAKITLDCRLPSQALDAQQQVHLLQIIREATLNAIKHAN-ASEIAVSCVTNPDGEVTVSIRDDGVGI 518 (568)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEEEECCCCEEEEEEEECCCCC
T ss_conf 9999999997511946999706887778888999999999999999998089-987999999748987999997799478
Q ss_pred CCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 402458874054545789987204999999999709879999877992699999419
Q gi|254780891|r 159 RFPEKFTQIVDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 159 ~~~e~~~~~~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 519 ~-~~~-----------~~~-~h~GL~iMrERa~~lgG~l~i~s~p~~GT~V~l~~P~ 562 (568)
T PRK10935 519 G-ELK-----------EPE-GHYGLNIMHERASRLGGTLTFSQNPGGGTTVSLTFPS 562 (568)
T ss_pred C-CCC-----------CCC-CCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEEEECC
T ss_conf 9-878-----------889-9857599999999669989999779996699998589