HHsearch alignment for GI: 254780891 and conserved domain: PRK11644
>PRK11644 sensory histidine kinase UhpB; Provisional.
Probab=99.31 E-value=3.5e-10 Score=84.55 Aligned_cols=172 Identities=16% Similarity=0.123 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 45454227999999999996144301----4789888999999----998631100112232000000000134444432
Q gi|254780891|r 22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF 93 (215)
Q Consensus 22 IaHdlrtPL~~I~~~~elL~~~~~~~----~~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (215)
T Consensus 311 LHDEiGQ~LTAIr~~a~~i~r~~~~~~~~~~~a~~I~~l~~~i~~~vR~ll~~LRP~-----~LDdLGL~~AL~~Lv~e~ 385 (497)
T PRK11644 311 LHDEIGQTITAIRTQASIVKRLAADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPR-----QLDDLTLEQAIRSLMREL 385 (497)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHCCHHHHHHHHHHHH
T ss_conf 000340599999999999863269976689999999999999999999999860903-----111248999999999987
Q ss_pred HH--CCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf 20--122332110000001000----123444567664687653200111112355772047999878984402458874
Q gi|254780891|r 94 IA--VDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI 167 (215)
Q Consensus 94 ~~--~~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~ 167 (215)
T Consensus 386 ~~~~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A-~~V~I~L~~~~~~l~L~I~DDG~Gf~-~~~---- 459 (497)
T PRK11644 386 ELEDRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADA-SAVTIQGWQQDERLMLVIEDNGSGLP-PGS---- 459 (497)
T ss_pred HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEECCCEEEEEEEECCCCCC-CCC----
T ss_conf 652579559998268766798246889999999999999973788-76999999769989999988998989-898----
Q ss_pred HCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf 054545789987204999999999709879999877992699999419
Q gi|254780891|r 168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK 215 (215)
Q Consensus 168 ~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~ 215 (215)
T Consensus 460 ---------~~~G~GL~GMrERV~aLGG~l~I~S~--~GT~I~V~LP~ 496 (497)
T PRK11644 460 ---------GQQGFGLRGMQERVSALGGTLTISCT--HGTRLSVTLPQ 496 (497)
T ss_pred ---------CCCCCCCHHHHHHHHHCCCEEEEEEC--CCCEEEEECCC
T ss_conf ---------99998926799999974997999828--99779995899