HHsearch alignment for GI: 254780891 and conserved domain: PRK11644

>PRK11644 sensory histidine kinase UhpB; Provisional.
Probab=99.31  E-value=3.5e-10  Score=84.55  Aligned_cols=172  Identities=16%  Similarity=0.123  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHH----HHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf             45454227999999999996144301----4789888999999----998631100112232000000000134444432
Q gi|254780891|r   22 ICHDIISPIGAIHNSLELLDEVGIED----EVMQLIRLSSMSA----IIRLKFMRLAFGYTGSVDSLIGLGDIEQVIEDF   93 (215)
Q Consensus        22 IaHdlrtPL~~I~~~~elL~~~~~~~----~~~~~i~~~~~~~----~~l~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
T Consensus       311 LHDEiGQ~LTAIr~~a~~i~r~~~~~~~~~~~a~~I~~l~~~i~~~vR~ll~~LRP~-----~LDdLGL~~AL~~Lv~e~  385 (497)
T PRK11644        311 LHDEIGQTITAIRTQASIVKRLAADNASVKQSGQLIEQLSLGVYDAVRRLLGRLRPR-----QLDDLTLEQAIRSLMREL  385 (497)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-----CHHHCCHHHHHHHHHHHH
T ss_conf             000340599999999999863269976689999999999999999999999860903-----111248999999999987


Q ss_pred             HH--CCCCCCCCCCCCCCCCCH----HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHH
Q ss_conf             20--122332110000001000----123444567664687653200111112355772047999878984402458874
Q gi|254780891|r   94 IA--VDKRVQVSWTGEKIDLSR----ERAKILLNLFMVAHASLPRGGKVTISVQDSKNENIFSLKINGNLARFPEKFTQI  167 (215)
Q Consensus        94 ~~--~~~~~~~~~~~~~~~~~~----~~~qvl~NLi~NA~~a~~~gg~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~  167 (215)
T Consensus       386 ~~~~~gi~~~l~~~~~~~~L~~~~~itlYRIvQEaLTNi~KHA~A-~~V~I~L~~~~~~l~L~I~DDG~Gf~-~~~----  459 (497)
T PRK11644        386 ELEDRGIVSHLDWQIDESALSETQRVTLFRVCQEGLNNIVKHADA-SAVTIQGWQQDERLMLVIEDNGSGLP-PGS----  459 (497)
T ss_pred             HHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC-CEEEEEEEECCCEEEEEEEECCCCCC-CCC----
T ss_conf             652579559998268766798246889999999999999973788-76999999769989999988998989-898----


Q ss_pred             HCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEEC
Q ss_conf             054545789987204999999999709879999877992699999419
Q gi|254780891|r  168 VDGNVESTIDSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLEK  215 (215)
Q Consensus       168 ~~~~~~~~~~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~~  215 (215)
T Consensus       460 ---------~~~G~GL~GMrERV~aLGG~l~I~S~--~GT~I~V~LP~  496 (497)
T PRK11644        460 ---------GQQGFGLRGMQERVSALGGTLTISCT--HGTRLSVTLPQ  496 (497)
T ss_pred             ---------CCCCCCCHHHHHHHHHCCCEEEEEEC--CCCEEEEECCC
T ss_conf             ---------99998926799999974997999828--99779995899