HHsearch alignment for GI: 254780891 and conserved domain: PRK13557
>PRK13557 histidine kinase; Provisional.
Probab=100.00 E-value=2.7e-38 Score=263.10 Aligned_cols=209 Identities=14% Similarity=0.124 Sum_probs=151.6
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC----CCC----HHHHHHHHHHHHHHHHHH----HHHHCCC
Q ss_conf 999967687999--99774545422799999999999614----430----147898889999999986----3110011
Q gi|254780891|r 6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIE----DEVMQLIRLSSMSAIIRL----KFMRLAF 71 (215)
Q Consensus 6 ~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~----~~~----~~~~~~i~~~~~~~~~l~----~~~r~~~ 71 (215)
T Consensus 150 ~~L~qaqklealg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~~~ 229 (538)
T PRK13557 150 DALRQAQKMEALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARKQK 229 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999999998878876269999999999998640168889999999999999999999999999999758276
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------
Q ss_conf 2232000000000134444432201223321100000---010001234445676646876532001111123-------
Q gi|254780891|r 72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ------- 141 (215)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~------- 141 (215)
T Consensus 230 l~~~~~~l~~lv~~~~~l~~~~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~ 309 (538)
T PRK13557 230 LDGRVVNLNGLVSGMGEMAERTLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEH 309 (538)
T ss_pred CCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
T ss_conf 87717729999999999999985299199998079887087558999999999898799865789759999987641542
Q ss_pred --------CCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf --------55772047999878984402458874054545789--98720499999999970987999987799269999
Q gi|254780891|r 142 --------DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA 211 (215)
Q Consensus 142 --------~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~ 211 (215)
T Consensus 310 ~~~~~~~~~~g~~v~i~V~DtG~GI~-~e~~~rIFepFfttk~~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v 388 (538)
T PRK13557 310 DLAMYHQLPPGRYVSIAVTDTGSGMP-PEILARVMEPFFTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRL 388 (538)
T ss_pred CCCCCCCCCCCCEEEEEEEECCCCCC-HHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE
T ss_conf 10012457888789999998689889-89999772501042245787772499999999987995999932898779999
Q ss_pred EEEC
Q ss_conf 9419
Q gi|254780891|r 212 LLEK 215 (215)
Q Consensus 212 ~l~~ 215 (215)
T Consensus 389 ~lP~ 392 (538)
T PRK13557 389 YFPA 392 (538)
T ss_pred EEEC
T ss_conf 9867