HHsearch alignment for GI: 254780891 and conserved domain: PRK13557

>PRK13557 histidine kinase; Provisional.
Probab=100.00  E-value=2.7e-38  Score=263.10  Aligned_cols=209  Identities=14%  Similarity=0.124  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC----CCC----HHHHHHHHHHHHHHHHHH----HHHHCCC
Q ss_conf             999967687999--99774545422799999999999614----430----147898889999999986----3110011
Q gi|254780891|r    6 CFNLSSMDLVAL--LCSRICHDIISPIGAIHNSLELLDEV----GIE----DEVMQLIRLSSMSAIIRL----KFMRLAF   71 (215)
Q Consensus         6 ~~~~~~~~laal--las~IaHdlrtPL~~I~~~~elL~~~----~~~----~~~~~~i~~~~~~~~~l~----~~~r~~~   71 (215)
T Consensus       150 ~~L~qaqklealg~~~a~isHEirnPL~~I~G~~~lL~~~~~~~~~~~~~~~~~l~~i~~~~~r~~~Li~~lL~fsr~~~  229 (538)
T PRK13557        150 DALRQAQKMEALGQLTGGIAHDFNNLLQVMSGYLDVLQMALSKPDADRERIARSVEHIRAAAERAATLTQQLLAFARKQK  229 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999999999998878876269999999999998640168889999999999999999999999999999758276


Q ss_pred             CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCC---CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCC-------
Q ss_conf             2232000000000134444432201223321100000---010001234445676646876532001111123-------
Q gi|254780891|r   72 GYTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEK---IDLSRERAKILLNLFMVAHASLPRGGKVTISVQ-------  141 (215)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~qvl~NLi~NA~~a~~~gg~I~i~~~-------  141 (215)
T Consensus       230 l~~~~~~l~~lv~~~~~l~~~~~~~~i~l~~~~~~~l~~~~~D~~~l~qvl~NLl~NA~~a~~~gg~i~i~~~~~~~~~~  309 (538)
T PRK13557        230 LDGRVVNLNGLVSGMGEMAERTLGDAVTIETDLAPDLWNCRIDPTQAEVALLNVLINARDAMPEGGRVTVRTENVEITEH  309 (538)
T ss_pred             CCCEEECHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCC
T ss_conf             87717729999999999999985299199998079887087558999999999898799865789759999987641542


Q ss_pred             --------CCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC--CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEE
Q ss_conf             --------55772047999878984402458874054545789--98720499999999970987999987799269999
Q gi|254780891|r  142 --------DSKNENIFSLKINGNLARFPEKFTQIVDGNVESTI--DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSA  211 (215)
Q Consensus       142 --------~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~--~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~  211 (215)
T Consensus       310 ~~~~~~~~~~g~~v~i~V~DtG~GI~-~e~~~rIFepFfttk~~~~GtGLGLaIv~~iV~~~gG~I~v~S~~G~GttF~v  388 (538)
T PRK13557        310 DLAMYHQLPPGRYVSIAVTDTGSGMP-PEILARVMEPFFTTKEEGKGTGLGLSMVYGFAKQSGGAVRIYSEVGEGTTVRL  388 (538)
T ss_pred             CCCCCCCCCCCCEEEEEEEECCCCCC-HHHHHHHHCCCEEECCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCEEEEE
T ss_conf             10012457888789999998689889-89999772501042245787772499999999987995999932898779999


Q ss_pred             EEEC
Q ss_conf             9419
Q gi|254780891|r  212 LLEK  215 (215)
Q Consensus       212 ~l~~  215 (215)
T Consensus       389 ~lP~  392 (538)
T PRK13557        389 YFPA  392 (538)
T ss_pred             EEEC
T ss_conf             9867