HHsearch alignment for GI: 254780891 and conserved domain: TIGR01924

>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.53  E-value=0.0031  Score=40.46  Aligned_cols=91  Identities=10%  Similarity=0.092  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHH---HH-CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC----CCCCCHHHHHH
Q ss_conf             23444567664687653---20-011111235577204799987898440245887405454578----99872049999
Q gi|254780891|r  115 RAKILLNLFMVAHASLP---RG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST----IDSHDIQFYYV  186 (215)
Q Consensus       115 ~~qvl~NLi~NA~~a~~---~g-g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~----~~g~GlGl~~~  186 (215)
T Consensus        44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~-d~~k~~lGPyd~~~~i~~L~eGGLGLFLi  122 (161)
T TIGR01924        44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDL-DTKKQELGPYDKSEDIDQLREGGLGLFLI  122 (161)
T ss_pred             HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCH-HHHHHHCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf             67766555303311223089836789988878875789998207864111-00253258979578754320177136645


Q ss_pred             HHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf             99999709879999877992699999
Q gi|254780891|r  187 ILLAHENKIRLLPEIIDDHNVVLSAL  212 (215)
Q Consensus       187 ~~i~~~~gG~i~v~~~~~~g~~f~~~  212 (215)
T Consensus       123 etLMD------~V~~~~~sGV~v~MT  142 (161)
T TIGR01924       123 ETLMD------EVKVYEDSGVTVAMT  142 (161)
T ss_pred             HCCCC------EEEEEECCCEEEEEE
T ss_conf             10376------169983286089886