HHsearch alignment for GI: 254780891 and conserved domain: TIGR01924
>TIGR01924 rsbW_low_gc anti-sigma B factor; InterPro: IPR010193 This entry describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter . RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex . Low ATP level or environmental stress causes the dephosphorylation of RsbV .; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0016989 sigma factor antagonist activity, 0006468 protein amino acid phosphorylation, 0045892 negative regulation of transcription DNA-dependent.
Probab=96.53 E-value=0.0031 Score=40.46 Aligned_cols=91 Identities=10% Similarity=0.092 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHH---HH-CCCCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCC----CCCCCHHHHHH
Q ss_conf 23444567664687653---20-011111235577204799987898440245887405454578----99872049999
Q gi|254780891|r 115 RAKILLNLFMVAHASLP---RG-GKVTISVQDSKNENIFSLKINGNLARFPEKFTQIVDGNVEST----IDSHDIQFYYV 186 (215)
Q Consensus 115 ~~qvl~NLi~NA~~a~~---~g-g~I~i~~~~~~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~----~~g~GlGl~~~ 186 (215)
T Consensus 44 ~KIAVSEA~TN~V~HAYke~~nvG~~~i~F~iyEDklev~vsD~G~SFD~-d~~k~~lGPyd~~~~i~~L~eGGLGLFLi 122 (161)
T TIGR01924 44 LKIAVSEACTNAVKHAYKEEENVGEISIEFEIYEDKLEVIVSDEGDSFDL-DTKKQELGPYDKSEDIDQLREGGLGLFLI 122 (161)
T ss_pred HHHHHHHHHCCCEEEEECCCCCEEEEEEEEEEEEEEEEEEEECCCCCCCH-HHHHHHCCCCCCCCCHHHHHCCCCHHHHH
T ss_conf 67766555303311223089836789988878875789998207864111-00253258979578754320177136645
Q ss_pred HHHHHHCCCEEEEEEECCCCEEEEEE
Q ss_conf 99999709879999877992699999
Q gi|254780891|r 187 ILLAHENKIRLLPEIIDDHNVVLSAL 212 (215)
Q Consensus 187 ~~i~~~~gG~i~v~~~~~~g~~f~~~ 212 (215)
T Consensus 123 etLMD------~V~~~~~sGV~v~MT 142 (161)
T TIGR01924 123 ETLMD------EVKVYEDSGVTVAMT 142 (161)
T ss_pred HCCCC------EEEEEECCCEEEEEE
T ss_conf 10376------169983286089886