HHsearch alignment for GI: 254780891 and conserved domain: TIGR02938

>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL; InterPro: IPR014285 NifL modulates the activity of the nitrogen fixation positive regulator protein NifA, acting as a negative regulator by binding NifA. NifA and NifL are encoded by adjacent genes..
Probab=99.88  E-value=3.6e-21  Score=154.39  Aligned_cols=207  Identities=12%  Similarity=0.107  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHC-CC---CHHHHHHHHHHHHHHHHHHHHHHCC-----CC
Q ss_conf             9999967687999---99774545422799999999999614-43---0147898889999999986311001-----12
Q gi|254780891|r    5 ICFNLSSMDLVAL---LCSRICHDIISPIGAIHNSLELLDEV-GI---EDEVMQLIRLSSMSAIIRLKFMRLA-----FG   72 (215)
Q Consensus         5 ~~~~~~~~~laal---las~IaHdlrtPL~~I~~~~elL~~~-~~---~~~~~~~i~~~~~~~~~l~~~~r~~-----~~   72 (215)
T Consensus       264 qAlmAEEE~le~~rEtl~AAI-hrl~gP~NlisaA~~~L~RRlGD~AGn~a~~~~lqqa~~ag~e~~e~L~~~IP~s~~e  342 (496)
T TIGR02938       264 QALMAEEEKLEALRETLSAAI-HRLQGPLNLISAAISVLERRLGDDAGNDAVAALLQQALAAGREALEALEKVIPQSDAE  342 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             999989988888766688888-8852871078899998632058323797999999999886399999750578877244


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCC
Q ss_conf             232000000000134444432201223321100000010-----00123444567664687653200----111112355
Q gi|254780891|r   73 YTGSVDSLIGLGDIEQVIEDFIAVDKRVQVSWTGEKIDL-----SRERAKILLNLFMVAHASLPRGG----KVTISVQDS  143 (215)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~qvl~NLi~NA~~a~~~gg----~I~i~~~~~  143 (215)
T Consensus       343 ~~~pVNlN~~lrdvi~l~T~rLLA~-GIvVdW~Pa~~LP~~~G~e~~lRslfK~LvdNAIeaM~~~~~~RREL~i~t~~~  421 (496)
T TIGR02938       343 AVVPVNLNQVLRDVITLLTERLLAA-GIVVDWQPAAVLPAVLGSESRLRSLFKALVDNAIEAMAQKGVKRRELSILTAVE  421 (496)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHC-CCEECCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC
T ss_conf             5466427789999998610557557-541516561016222078525789999999999998530784102310102230


Q ss_pred             CCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCC----CCCCHHHHHHHHHHHHCCCEEEEEEECCCCEEEEEEEE
Q ss_conf             772047999878984402458874054545789----98720499999999970987999987799269999941
Q gi|254780891|r  144 KNENIFSLKINGNLARFPEKFTQIVDGNVESTI----DSHDIQFYYVILLAHENKIRLLPEIIDDHNVVLSALLE  214 (215)
Q Consensus       144 ~~~~~i~V~D~G~Gi~~~e~~~~~~~~~~~~~~----~g~GlGl~~~~~i~~~~gG~i~v~~~~~~g~~f~~~l~  214 (215)
T Consensus       422 ~~li~~~i~DsGPGI-P~dlr~kvFEPFFttK~~~Gr~h~G~GL~vaqeiVa~H~G~i~~D~dy~eGCri~vef~  495 (496)
T TIGR02938       422 DDLIRVEIEDSGPGI-PADLRLKVFEPFFTTKASSGRKHVGMGLAVAQEIVAKHAGLIDVDDDYREGCRIVVEFE  495 (496)
T ss_pred             CCEEEEEEEECCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEEEEC
T ss_conf             856899997358798-72442252367322688877842334626889997504987973688877735777623